Experiment: Rifampicin 0.0003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0473 and Synpcc7942_0474 are separated by 93 nucleotides Synpcc7942_0474 and petN are separated by 15 nucleotides petN and clpS are separated by 7 nucleotides clpS and ylmG are separated by 31 nucleotides ylmG and lepB are separated by 30 nucleotides lepB and lepA overlap by 1 nucleotides
Synpcc7942_0473: Synpcc7942_0473 - NADH:flavin oxidoreductase Old Yellow Enzyme family-like, at 459,096 to 460,202
_0473
Synpcc7942_0474: Synpcc7942_0474 - hypothetical protein, at 460,296 to 460,433
_0474
Synpcc7942_0475: petN - cytochrome b6-f complex subunit VIII, at 460,449 to 460,544
petN
Synpcc7942_0476: clpS - ATP-dependent Clp protease adaptor, at 460,552 to 460,962
clpS
Synpcc7942_0477: ylmG - conserved hypothetical protein YCF19, at 460,994 to 461,293
ylmG
Synpcc7942_0478: lepB - thylakoidal processing peptidase. Serine peptidase. MEROPS family S26A, at 461,324 to 461,935
lepB
Synpcc7942_0479: lepA - GTP-binding protein LepA, at 461,935 to 463,749
lepA
Position (kb) 460
461 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 459.564 kb on + strand, within Synpcc7942_0473 at 459.564 kb on + strand, within Synpcc7942_0473 at 459.564 kb on + strand, within Synpcc7942_0473 at 459.564 kb on + strand, within Synpcc7942_0473 at 459.578 kb on - strand at 459.624 kb on - strand, within Synpcc7942_0473 at 459.624 kb on - strand, within Synpcc7942_0473 at 459.626 kb on - strand, within Synpcc7942_0473 at 459.626 kb on - strand, within Synpcc7942_0473 at 459.633 kb on + strand, within Synpcc7942_0473 at 459.665 kb on + strand, within Synpcc7942_0473 at 459.670 kb on + strand, within Synpcc7942_0473 at 459.670 kb on + strand, within Synpcc7942_0473 at 459.683 kb on - strand, within Synpcc7942_0473 at 459.689 kb on + strand, within Synpcc7942_0473 at 459.704 kb on - strand, within Synpcc7942_0473 at 459.735 kb on + strand, within Synpcc7942_0473 at 459.735 kb on + strand, within Synpcc7942_0473 at 459.744 kb on + strand, within Synpcc7942_0473 at 459.750 kb on - strand, within Synpcc7942_0473 at 459.754 kb on + strand, within Synpcc7942_0473 at 459.777 kb on + strand, within Synpcc7942_0473 at 459.777 kb on + strand, within Synpcc7942_0473 at 459.778 kb on + strand, within Synpcc7942_0473 at 459.778 kb on + strand, within Synpcc7942_0473 at 459.778 kb on + strand, within Synpcc7942_0473 at 459.785 kb on - strand, within Synpcc7942_0473 at 459.785 kb on - strand, within Synpcc7942_0473 at 459.792 kb on + strand, within Synpcc7942_0473 at 459.810 kb on + strand, within Synpcc7942_0473 at 459.811 kb on - strand, within Synpcc7942_0473 at 459.811 kb on - strand, within Synpcc7942_0473 at 459.834 kb on + strand, within Synpcc7942_0473 at 459.868 kb on - strand, within Synpcc7942_0473 at 459.916 kb on - strand, within Synpcc7942_0473 at 459.925 kb on + strand, within Synpcc7942_0473 at 459.933 kb on - strand, within Synpcc7942_0473 at 459.933 kb on - strand, within Synpcc7942_0473 at 459.941 kb on + strand, within Synpcc7942_0473 at 459.943 kb on + strand, within Synpcc7942_0473 at 459.951 kb on - strand, within Synpcc7942_0473 at 459.957 kb on - strand, within Synpcc7942_0473 at 459.959 kb on - strand, within Synpcc7942_0473 at 459.966 kb on + strand, within Synpcc7942_0473 at 459.974 kb on - strand, within Synpcc7942_0473 at 459.975 kb on + strand, within Synpcc7942_0473 at 459.976 kb on + strand, within Synpcc7942_0473 at 459.983 kb on - strand, within Synpcc7942_0473 at 459.996 kb on + strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.054 kb on + strand, within Synpcc7942_0473 at 460.073 kb on + strand, within Synpcc7942_0473 at 460.075 kb on - strand, within Synpcc7942_0473 at 460.081 kb on - strand, within Synpcc7942_0473 at 460.115 kb on + strand at 460.123 kb on - strand at 460.123 kb on - strand at 460.131 kb on + strand at 460.147 kb on - strand at 460.168 kb on - strand at 460.168 kb on - strand at 460.295 kb on + strand at 460.653 kb on + strand at 460.656 kb on - strand, within clpS at 460.656 kb on - strand, within clpS at 460.666 kb on - strand, within clpS at 460.671 kb on - strand, within clpS at 460.688 kb on + strand, within clpS at 460.690 kb on + strand, within clpS at 460.695 kb on + strand, within clpS at 460.703 kb on + strand, within clpS at 460.717 kb on + strand, within clpS at 460.717 kb on + strand, within clpS at 460.769 kb on - strand, within clpS at 460.863 kb on + strand, within clpS at 460.881 kb on - strand, within clpS at 460.883 kb on + strand, within clpS at 460.885 kb on + strand, within clpS at 460.891 kb on - strand, within clpS at 460.915 kb on - strand, within clpS at 460.925 kb on - strand at 460.961 kb on + strand at 460.964 kb on - strand at 461.046 kb on - strand, within ylmG at 461.046 kb on - strand, within ylmG at 461.059 kb on - strand, within ylmG at 461.110 kb on - strand, within ylmG at 461.165 kb on - strand, within ylmG at 461.288 kb on + strand at 461.296 kb on - strand at 461.298 kb on - strand at 461.335 kb on - strand at 461.338 kb on - strand at 461.362 kb on + strand at 461.363 kb on + strand at 461.363 kb on + strand at 461.371 kb on - strand at 461.371 kb on - strand at 461.372 kb on + strand at 461.378 kb on - strand at 461.380 kb on + strand at 461.902 kb on - strand at 461.931 kb on + strand at 461.951 kb on + strand at 461.951 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0003125 mg/ml remove 459,564 + Synpcc7942_0473 0.42 +1.6 459,564 + Synpcc7942_0473 0.42 +0.6 459,564 + Synpcc7942_0473 0.42 +3.2 459,564 + Synpcc7942_0473 0.42 -1.8 459,578 - +0.8 459,624 - Synpcc7942_0473 0.48 -0.5 459,624 - Synpcc7942_0473 0.48 -0.1 459,626 - Synpcc7942_0473 0.48 +0.6 459,626 - Synpcc7942_0473 0.48 -0.1 459,633 + Synpcc7942_0473 0.49 +0.1 459,665 + Synpcc7942_0473 0.51 -0.6 459,670 + Synpcc7942_0473 0.52 +0.2 459,670 + Synpcc7942_0473 0.52 -0.2 459,683 - Synpcc7942_0473 0.53 -0.2 459,689 + Synpcc7942_0473 0.54 -0.3 459,704 - Synpcc7942_0473 0.55 -0.8 459,735 + Synpcc7942_0473 0.58 +2.8 459,735 + Synpcc7942_0473 0.58 +1.8 459,744 + Synpcc7942_0473 0.59 -0.5 459,750 - Synpcc7942_0473 0.59 +0.8 459,754 + Synpcc7942_0473 0.59 +1.2 459,777 + Synpcc7942_0473 0.62 -0.2 459,777 + Synpcc7942_0473 0.62 -0.3 459,778 + Synpcc7942_0473 0.62 +0.3 459,778 + Synpcc7942_0473 0.62 +1.6 459,778 + Synpcc7942_0473 0.62 +2.0 459,785 - Synpcc7942_0473 0.62 +0.8 459,785 - Synpcc7942_0473 0.62 +0.0 459,792 + Synpcc7942_0473 0.63 +0.1 459,810 + Synpcc7942_0473 0.64 +0.8 459,811 - Synpcc7942_0473 0.65 -0.8 459,811 - Synpcc7942_0473 0.65 +0.6 459,834 + Synpcc7942_0473 0.67 -0.1 459,868 - Synpcc7942_0473 0.70 +0.8 459,916 - Synpcc7942_0473 0.74 +1.1 459,925 + Synpcc7942_0473 0.75 +2.3 459,933 - Synpcc7942_0473 0.76 +1.3 459,933 - Synpcc7942_0473 0.76 +0.3 459,941 + Synpcc7942_0473 0.76 +0.8 459,943 + Synpcc7942_0473 0.77 +1.7 459,951 - Synpcc7942_0473 0.77 +1.2 459,957 - Synpcc7942_0473 0.78 -0.8 459,959 - Synpcc7942_0473 0.78 +2.4 459,966 + Synpcc7942_0473 0.79 +1.6 459,974 - Synpcc7942_0473 0.79 +1.7 459,975 + Synpcc7942_0473 0.79 +0.8 459,976 + Synpcc7942_0473 0.79 +1.4 459,983 - Synpcc7942_0473 0.80 +0.8 459,996 + Synpcc7942_0473 0.81 +0.2 460,004 - Synpcc7942_0473 0.82 +0.2 460,004 - Synpcc7942_0473 0.82 -0.8 460,004 - Synpcc7942_0473 0.82 +0.5 460,004 - Synpcc7942_0473 0.82 +1.0 460,054 + Synpcc7942_0473 0.87 -3.5 460,073 + Synpcc7942_0473 0.88 +0.6 460,075 - Synpcc7942_0473 0.88 +0.2 460,081 - Synpcc7942_0473 0.89 -0.1 460,115 + +0.8 460,123 - +1.5 460,123 - +1.5 460,131 + -2.3 460,147 - -2.6 460,168 - -0.6 460,168 - +0.2 460,295 + -0.8 460,653 + +2.6 460,656 - clpS Synpcc7942_0476 0.25 +1.6 460,656 - clpS Synpcc7942_0476 0.25 -0.5 460,666 - clpS Synpcc7942_0476 0.28 +1.3 460,671 - clpS Synpcc7942_0476 0.29 +1.1 460,688 + clpS Synpcc7942_0476 0.33 -1.6 460,690 + clpS Synpcc7942_0476 0.34 +0.4 460,695 + clpS Synpcc7942_0476 0.35 -0.1 460,703 + clpS Synpcc7942_0476 0.37 -0.8 460,717 + clpS Synpcc7942_0476 0.40 +0.7 460,717 + clpS Synpcc7942_0476 0.40 +0.2 460,769 - clpS Synpcc7942_0476 0.53 +1.1 460,863 + clpS Synpcc7942_0476 0.76 +1.1 460,881 - clpS Synpcc7942_0476 0.80 -0.3 460,883 + clpS Synpcc7942_0476 0.81 -1.2 460,885 + clpS Synpcc7942_0476 0.81 +1.6 460,891 - clpS Synpcc7942_0476 0.82 -0.4 460,915 - clpS Synpcc7942_0476 0.88 -0.0 460,925 - +1.4 460,961 + -0.8 460,964 - +1.2 461,046 - ylmG Synpcc7942_0477 0.17 +2.0 461,046 - ylmG Synpcc7942_0477 0.17 +0.8 461,059 - ylmG Synpcc7942_0477 0.22 +0.2 461,110 - ylmG Synpcc7942_0477 0.39 -1.9 461,165 - ylmG Synpcc7942_0477 0.57 -2.1 461,288 + -0.8 461,296 - -1.3 461,298 - +0.9 461,335 - +0.2 461,338 - +0.9 461,362 + -0.3 461,363 + -0.5 461,363 + -1.3 461,371 - -0.5 461,371 - -0.2 461,372 + +0.8 461,378 - -0.2 461,380 + -1.0 461,902 - +0.8 461,931 + +1.7 461,951 + -2.6 461,951 + +0.0
Or see this region's nucleotide sequence