Experiment: Rifampicin 0.0003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bgl and rbfA overlap by 4 nucleotides rbfA and ycf33 are separated by 51 nucleotides
Synpcc7942_0354: bgl - Beta-glucosidase-related glycosidase-like, at 346,832 to 348,460
bgl
Synpcc7942_0355: rbfA - ribosome-binding factor A, at 348,457 to 348,870
rbfA
Synpcc7942_0356: ycf33 - conserved hypothetical protein YCF33, at 348,922 to 349,146
ycf33
Position (kb) 348
349 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 347.521 kb on + strand, within bgl at 347.567 kb on + strand, within bgl at 347.567 kb on + strand, within bgl at 347.567 kb on + strand, within bgl at 347.644 kb on + strand, within bgl at 347.651 kb on + strand, within bgl at 347.655 kb on + strand, within bgl at 347.673 kb on - strand, within bgl at 347.801 kb on + strand, within bgl at 347.878 kb on - strand, within bgl at 347.909 kb on - strand, within bgl at 347.927 kb on - strand, within bgl at 347.985 kb on - strand, within bgl at 348.018 kb on + strand, within bgl at 348.035 kb on + strand, within bgl at 348.035 kb on + strand, within bgl at 348.090 kb on + strand, within bgl at 348.099 kb on - strand, within bgl at 348.102 kb on - strand, within bgl at 348.112 kb on - strand, within bgl at 348.120 kb on - strand, within bgl at 348.123 kb on + strand, within bgl at 348.131 kb on - strand, within bgl at 348.141 kb on - strand, within bgl at 348.149 kb on + strand, within bgl at 348.157 kb on - strand, within bgl at 348.165 kb on + strand, within bgl at 348.178 kb on - strand, within bgl at 348.178 kb on - strand at 348.183 kb on - strand, within bgl at 348.201 kb on + strand at 348.245 kb on + strand, within bgl at 348.273 kb on - strand, within bgl at 348.344 kb on - strand at 348.344 kb on - strand at 348.349 kb on - strand at 348.381 kb on + strand at 348.393 kb on + strand at 348.403 kb on + strand at 348.415 kb on + strand at 348.415 kb on + strand at 348.422 kb on + strand at 348.423 kb on - strand at 348.423 kb on - strand at 348.423 kb on - strand at 348.427 kb on + strand at 348.435 kb on - strand at 348.468 kb on - strand at 348.473 kb on - strand at 348.475 kb on + strand at 348.475 kb on + strand at 348.475 kb on + strand at 348.489 kb on + strand at 348.496 kb on - strand at 348.573 kb on - strand, within rbfA at 348.625 kb on + strand, within rbfA at 348.633 kb on - strand, within rbfA at 348.656 kb on + strand, within rbfA at 348.693 kb on - strand, within rbfA at 348.744 kb on - strand, within rbfA at 348.758 kb on + strand, within rbfA at 348.761 kb on - strand, within rbfA at 348.763 kb on + strand, within rbfA at 348.768 kb on + strand, within rbfA at 348.771 kb on - strand, within rbfA at 348.797 kb on - strand, within rbfA at 348.824 kb on + strand, within rbfA at 348.845 kb on + strand at 348.867 kb on + strand at 348.892 kb on + strand at 348.907 kb on - strand at 348.910 kb on - strand at 348.914 kb on + strand at 348.917 kb on - strand at 348.935 kb on - strand at 348.953 kb on - strand, within ycf33 at 348.965 kb on - strand at 348.965 kb on - strand, within ycf33 at 349.164 kb on + strand at 349.206 kb on + strand at 349.206 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.252 kb on + strand at 349.279 kb on + strand at 349.279 kb on + strand at 349.287 kb on - strand at 349.301 kb on + strand at 349.344 kb on - strand at 349.344 kb on - strand at 349.369 kb on + strand at 349.369 kb on + strand at 349.369 kb on + strand at 349.371 kb on - strand at 349.377 kb on - strand at 349.384 kb on + strand at 349.453 kb on - strand at 349.460 kb on - strand at 349.476 kb on - strand at 349.495 kb on + strand at 349.505 kb on - strand at 349.505 kb on - strand at 349.518 kb on + strand at 349.520 kb on - strand at 349.573 kb on + strand at 349.580 kb on - strand at 349.581 kb on - strand at 349.588 kb on + strand at 349.615 kb on + strand at 349.673 kb on - strand at 349.691 kb on - strand at 349.704 kb on + strand at 349.705 kb on + strand at 349.812 kb on + strand at 349.820 kb on - strand at 349.848 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0003125 mg/ml remove 347,521 + bgl Synpcc7942_0354 0.42 -1.8 347,567 + bgl Synpcc7942_0354 0.45 +0.9 347,567 + bgl Synpcc7942_0354 0.45 -1.4 347,567 + bgl Synpcc7942_0354 0.45 +0.5 347,644 + bgl Synpcc7942_0354 0.50 -0.7 347,651 + bgl Synpcc7942_0354 0.50 -1.8 347,655 + bgl Synpcc7942_0354 0.51 +1.2 347,673 - bgl Synpcc7942_0354 0.52 -2.1 347,801 + bgl Synpcc7942_0354 0.59 -0.5 347,878 - bgl Synpcc7942_0354 0.64 +1.0 347,909 - bgl Synpcc7942_0354 0.66 +0.8 347,927 - bgl Synpcc7942_0354 0.67 -0.8 347,985 - bgl Synpcc7942_0354 0.71 -0.3 348,018 + bgl Synpcc7942_0354 0.73 -1.8 348,035 + bgl Synpcc7942_0354 0.74 -0.1 348,035 + bgl Synpcc7942_0354 0.74 -0.7 348,090 + bgl Synpcc7942_0354 0.77 -1.2 348,099 - bgl Synpcc7942_0354 0.78 +0.4 348,102 - bgl Synpcc7942_0354 0.78 +0.8 348,112 - bgl Synpcc7942_0354 0.79 -0.4 348,120 - bgl Synpcc7942_0354 0.79 -0.8 348,123 + bgl Synpcc7942_0354 0.79 +0.2 348,131 - bgl Synpcc7942_0354 0.80 +1.2 348,141 - bgl Synpcc7942_0354 0.80 +0.7 348,149 + bgl Synpcc7942_0354 0.81 +1.2 348,157 - bgl Synpcc7942_0354 0.81 -2.4 348,165 + bgl Synpcc7942_0354 0.82 -1.4 348,178 - bgl Synpcc7942_0354 0.83 -2.9 348,178 - -0.2 348,183 - bgl Synpcc7942_0354 0.83 +1.3 348,201 + -0.8 348,245 + bgl Synpcc7942_0354 0.87 -0.6 348,273 - bgl Synpcc7942_0354 0.88 -3.9 348,344 - -0.4 348,344 - +1.2 348,349 - -2.1 348,381 + +0.2 348,393 + +0.4 348,403 + -1.8 348,415 + -0.0 348,415 + -0.5 348,422 + -1.8 348,423 - +0.5 348,423 - -0.7 348,423 - +1.1 348,427 + +2.2 348,435 - -0.1 348,468 - -1.2 348,473 - +0.3 348,475 + -2.8 348,475 + +0.2 348,475 + +3.8 348,489 + -0.9 348,496 - +1.4 348,573 - rbfA Synpcc7942_0355 0.28 -4.1 348,625 + rbfA Synpcc7942_0355 0.41 -3.3 348,633 - rbfA Synpcc7942_0355 0.43 -4.9 348,656 + rbfA Synpcc7942_0355 0.48 -4.6 348,693 - rbfA Synpcc7942_0355 0.57 -3.1 348,744 - rbfA Synpcc7942_0355 0.69 -3.0 348,758 + rbfA Synpcc7942_0355 0.73 -2.1 348,761 - rbfA Synpcc7942_0355 0.73 -3.3 348,763 + rbfA Synpcc7942_0355 0.74 -4.2 348,768 + rbfA Synpcc7942_0355 0.75 +0.2 348,771 - rbfA Synpcc7942_0355 0.76 -2.6 348,797 - rbfA Synpcc7942_0355 0.82 -2.7 348,824 + rbfA Synpcc7942_0355 0.89 -4.6 348,845 + -1.8 348,867 + -0.2 348,892 + -0.1 348,907 - +1.2 348,910 - +0.5 348,914 + +0.0 348,917 - -2.1 348,935 - +0.7 348,953 - ycf33 Synpcc7942_0356 0.14 -0.6 348,965 - +0.2 348,965 - ycf33 Synpcc7942_0356 0.19 -1.1 349,164 + +0.5 349,206 + -0.0 349,206 + -0.4 349,220 + +1.7 349,220 + -0.1 349,220 + -0.8 349,220 + -1.4 349,220 + -0.1 349,220 + +0.2 349,220 + +0.2 349,220 + -0.8 349,228 - -2.4 349,228 - -0.6 349,228 - +0.4 349,228 - +0.2 349,228 - -1.8 349,228 - +0.2 349,228 - -1.1 349,228 - +0.8 349,228 - -1.8 349,228 - +0.8 349,228 - +2.4 349,252 + +3.4 349,279 + -3.6 349,279 + -1.4 349,287 - -2.6 349,301 + +1.2 349,344 - +1.7 349,344 - +1.6 349,369 + -2.6 349,369 + -0.2 349,369 + +0.7 349,371 - +1.1 349,377 - +0.5 349,384 + -0.2 349,453 - +0.4 349,460 - +0.5 349,476 - +2.2 349,495 + +0.6 349,505 - +0.4 349,505 - +1.8 349,518 + +1.2 349,520 - +0.8 349,573 + -1.1 349,580 - -0.5 349,581 - +0.4 349,588 + +1.8 349,615 + +1.2 349,673 - +0.1 349,691 - +0.5 349,704 + +0.5 349,705 + -0.5 349,812 + -0.5 349,820 - -0.7 349,848 + +0.6
Or see this region's nucleotide sequence