Experiment: Rifampicin 0.0003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purB and digD are separated by 57 nucleotides digD and Synpcc7942_0317 are separated by 273 nucleotides
Synpcc7942_0315: purB - adenylosuccinate lyase, at 313,079 to 314,374
purB
Synpcc7942_0316: digD - hypothetical protein, at 314,432 to 314,623
digD
Synpcc7942_0317: Synpcc7942_0317 - hypothetical protein, at 314,897 to 315,355
_0317
Position (kb) 314
315 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 314.438 kb on - strand at 314.478 kb on + strand, within digD at 314.484 kb on + strand, within digD at 314.486 kb on - strand, within digD at 314.486 kb on - strand, within digD at 314.486 kb on - strand, within digD at 314.491 kb on - strand, within digD at 314.497 kb on + strand, within digD at 314.505 kb on - strand, within digD at 314.536 kb on - strand, within digD at 314.538 kb on + strand, within digD at 314.550 kb on + strand, within digD at 314.558 kb on - strand, within digD at 314.562 kb on + strand, within digD at 314.562 kb on + strand, within digD at 314.562 kb on + strand, within digD at 314.570 kb on - strand, within digD at 314.570 kb on - strand, within digD at 314.580 kb on - strand at 314.625 kb on + strand at 314.647 kb on + strand at 314.647 kb on + strand at 314.647 kb on + strand at 314.647 kb on + strand at 314.655 kb on - strand at 314.660 kb on - strand at 314.666 kb on - strand at 314.666 kb on - strand at 314.758 kb on - strand at 314.770 kb on - strand at 314.795 kb on + strand at 314.795 kb on + strand at 314.803 kb on - strand at 314.824 kb on - strand at 314.848 kb on + strand at 314.872 kb on - strand at 314.891 kb on + strand at 314.892 kb on + strand at 314.896 kb on + strand at 314.908 kb on + strand at 314.928 kb on + strand at 314.941 kb on + strand at 314.946 kb on + strand, within Synpcc7942_0317 at 314.946 kb on + strand, within Synpcc7942_0317 at 314.949 kb on - strand, within Synpcc7942_0317 at 314.949 kb on - strand, within Synpcc7942_0317 at 314.954 kb on - strand, within Synpcc7942_0317 at 314.971 kb on + strand, within Synpcc7942_0317 at 314.979 kb on - strand at 314.995 kb on + strand, within Synpcc7942_0317 at 315.042 kb on + strand, within Synpcc7942_0317 at 315.042 kb on + strand, within Synpcc7942_0317 at 315.086 kb on - strand, within Synpcc7942_0317 at 315.095 kb on + strand, within Synpcc7942_0317 at 315.096 kb on - strand, within Synpcc7942_0317 at 315.103 kb on - strand, within Synpcc7942_0317 at 315.126 kb on + strand, within Synpcc7942_0317 at 315.138 kb on + strand, within Synpcc7942_0317 at 315.142 kb on + strand, within Synpcc7942_0317 at 315.142 kb on - strand, within Synpcc7942_0317 at 315.146 kb on - strand, within Synpcc7942_0317 at 315.150 kb on - strand, within Synpcc7942_0317 at 315.160 kb on - strand, within Synpcc7942_0317 at 315.189 kb on + strand, within Synpcc7942_0317 at 315.213 kb on + strand, within Synpcc7942_0317 at 315.221 kb on - strand, within Synpcc7942_0317 at 315.234 kb on + strand, within Synpcc7942_0317 at 315.242 kb on - strand, within Synpcc7942_0317 at 315.242 kb on - strand, within Synpcc7942_0317 at 315.254 kb on - strand, within Synpcc7942_0317 at 315.297 kb on - strand, within Synpcc7942_0317 at 315.302 kb on + strand, within Synpcc7942_0317 at 315.302 kb on + strand, within Synpcc7942_0317 at 315.318 kb on + strand at 315.322 kb on + strand at 315.323 kb on + strand at 315.324 kb on + strand at 315.332 kb on - strand at 315.332 kb on - strand at 315.354 kb on - strand at 315.413 kb on - strand at 315.418 kb on - strand at 315.423 kb on - strand at 315.433 kb on - strand at 315.442 kb on + strand at 315.458 kb on - strand at 315.485 kb on + strand at 315.493 kb on + strand at 315.493 kb on - strand at 315.501 kb on - strand at 315.501 kb on - strand at 315.502 kb on - strand at 315.519 kb on + strand at 315.519 kb on + strand at 315.519 kb on - strand at 315.527 kb on - strand at 315.527 kb on - strand at 315.527 kb on - strand at 315.534 kb on + strand at 315.542 kb on - strand at 315.547 kb on + strand at 315.555 kb on - strand at 315.564 kb on - strand at 315.568 kb on + strand at 315.570 kb on - strand at 315.570 kb on - strand at 315.576 kb on - strand at 315.576 kb on - strand at 315.576 kb on - strand at 315.581 kb on + strand at 315.586 kb on + strand at 315.586 kb on + strand at 315.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0003125 mg/ml remove 314,438 - +0.3 314,478 + digD Synpcc7942_0316 0.24 -1.2 314,484 + digD Synpcc7942_0316 0.27 -2.1 314,486 - digD Synpcc7942_0316 0.28 +1.4 314,486 - digD Synpcc7942_0316 0.28 -3.2 314,486 - digD Synpcc7942_0316 0.28 -1.8 314,491 - digD Synpcc7942_0316 0.31 -0.5 314,497 + digD Synpcc7942_0316 0.34 -0.8 314,505 - digD Synpcc7942_0316 0.38 -1.6 314,536 - digD Synpcc7942_0316 0.54 -2.0 314,538 + digD Synpcc7942_0316 0.55 -0.5 314,550 + digD Synpcc7942_0316 0.61 -1.6 314,558 - digD Synpcc7942_0316 0.66 +1.8 314,562 + digD Synpcc7942_0316 0.68 +0.2 314,562 + digD Synpcc7942_0316 0.68 -0.4 314,562 + digD Synpcc7942_0316 0.68 -4.2 314,570 - digD Synpcc7942_0316 0.72 -2.1 314,570 - digD Synpcc7942_0316 0.72 -0.8 314,580 - -1.8 314,625 + -0.8 314,647 + -2.2 314,647 + -1.8 314,647 + +0.0 314,647 + -1.0 314,655 - -1.5 314,660 - +0.2 314,666 - -0.1 314,666 - -2.1 314,758 - -1.4 314,770 - +0.2 314,795 + -1.1 314,795 + -0.4 314,803 - -0.8 314,824 - +0.5 314,848 + +1.2 314,872 - -0.2 314,891 + +0.6 314,892 + +0.1 314,896 + +0.2 314,908 + -0.4 314,928 + -1.8 314,941 + +2.4 314,946 + Synpcc7942_0317 0.11 +0.8 314,946 + Synpcc7942_0317 0.11 +0.2 314,949 - Synpcc7942_0317 0.11 -1.8 314,949 - Synpcc7942_0317 0.11 +1.1 314,954 - Synpcc7942_0317 0.12 +0.2 314,971 + Synpcc7942_0317 0.16 -0.8 314,979 - -1.8 314,995 + Synpcc7942_0317 0.21 +0.8 315,042 + Synpcc7942_0317 0.32 -0.8 315,042 + Synpcc7942_0317 0.32 -1.8 315,086 - Synpcc7942_0317 0.41 +0.2 315,095 + Synpcc7942_0317 0.43 +0.2 315,096 - Synpcc7942_0317 0.43 -2.1 315,103 - Synpcc7942_0317 0.45 +0.1 315,126 + Synpcc7942_0317 0.50 -0.4 315,138 + Synpcc7942_0317 0.53 +1.0 315,142 + Synpcc7942_0317 0.53 -1.8 315,142 - Synpcc7942_0317 0.53 +0.5 315,146 - Synpcc7942_0317 0.54 +1.2 315,150 - Synpcc7942_0317 0.55 +0.4 315,160 - Synpcc7942_0317 0.57 -1.8 315,189 + Synpcc7942_0317 0.64 -0.8 315,213 + Synpcc7942_0317 0.69 -1.0 315,221 - Synpcc7942_0317 0.71 -2.1 315,234 + Synpcc7942_0317 0.73 +0.8 315,242 - Synpcc7942_0317 0.75 +0.6 315,242 - Synpcc7942_0317 0.75 +2.7 315,254 - Synpcc7942_0317 0.78 +0.6 315,297 - Synpcc7942_0317 0.87 +1.3 315,302 + Synpcc7942_0317 0.88 +0.5 315,302 + Synpcc7942_0317 0.88 +0.4 315,318 + -0.1 315,322 + +0.2 315,323 + +0.8 315,324 + -0.4 315,332 - -0.7 315,332 - +1.0 315,354 - -1.8 315,413 - +0.4 315,418 - +1.0 315,423 - +4.9 315,433 - -0.8 315,442 + +0.2 315,458 - -0.9 315,485 + -0.4 315,493 + +1.6 315,493 - +0.2 315,501 - -1.8 315,501 - -1.0 315,502 - -0.5 315,519 + -2.4 315,519 + -1.9 315,519 - +1.0 315,527 - +0.9 315,527 - +0.9 315,527 - -1.4 315,534 + -0.5 315,542 - -1.4 315,547 + -1.8 315,555 - +1.4 315,564 - +2.1 315,568 + +0.9 315,570 - +1.2 315,570 - +1.5 315,576 - -0.3 315,576 - +1.1 315,576 - -0.9 315,581 + +0.7 315,586 + +1.2 315,586 + -0.8 315,594 - -2.1
Or see this region's nucleotide sequence