Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0218

Experiment: Rifampicin 0.0003125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0217 and tRNApro are separated by 55 nucleotidestRNApro and Synpcc7942_0218 are separated by 23 nucleotidesSynpcc7942_0218 and Synpcc7942_0219 are separated by 124 nucleotidesSynpcc7942_0219 and minD are separated by 2 nucleotides Synpcc7942_0217: Synpcc7942_0217 - phosphatase-like, at 219,113 to 219,871 _0217 Synpcc7942_R0029: tRNApro - tRNA-Pro, at 219,927 to 220,000 tRNApro Synpcc7942_0218: Synpcc7942_0218 - hypothetical protein, at 220,024 to 220,191 _0218 Synpcc7942_0219: Synpcc7942_0219 - hypothetical protein, at 220,316 to 220,636 _0219 Synpcc7942_0220: minD - probable cell division inhibitor MinD, at 220,639 to 221,397 minD Position (kb) 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 219.105 kb on - strandat 219.105 kb on - strandat 219.164 kb on + strandat 219.195 kb on - strand, within Synpcc7942_0217at 219.214 kb on + strand, within Synpcc7942_0217at 219.221 kb on + strand, within Synpcc7942_0217at 219.221 kb on + strand, within Synpcc7942_0217at 219.221 kb on + strand, within Synpcc7942_0217at 219.224 kb on - strand, within Synpcc7942_0217at 219.229 kb on - strand, within Synpcc7942_0217at 219.229 kb on - strand, within Synpcc7942_0217at 219.229 kb on - strand, within Synpcc7942_0217at 219.229 kb on - strand, within Synpcc7942_0217at 219.254 kb on + strand, within Synpcc7942_0217at 219.267 kb on - strand, within Synpcc7942_0217at 219.362 kb on + strand, within Synpcc7942_0217at 219.369 kb on + strand, within Synpcc7942_0217at 219.369 kb on + strand, within Synpcc7942_0217at 219.369 kb on + strand, within Synpcc7942_0217at 219.370 kb on - strand, within Synpcc7942_0217at 219.377 kb on - strand, within Synpcc7942_0217at 219.412 kb on + strand, within Synpcc7942_0217at 219.430 kb on + strand, within Synpcc7942_0217at 219.433 kb on - strand, within Synpcc7942_0217at 219.444 kb on + strand, within Synpcc7942_0217at 219.444 kb on + strand, within Synpcc7942_0217at 219.452 kb on - strand, within Synpcc7942_0217at 219.500 kb on - strand, within Synpcc7942_0217at 219.500 kb on - strand, within Synpcc7942_0217at 219.502 kb on + strand, within Synpcc7942_0217at 219.502 kb on + strand, within Synpcc7942_0217at 219.505 kb on - strand, within Synpcc7942_0217at 219.509 kb on + strand, within Synpcc7942_0217at 219.510 kb on - strand, within Synpcc7942_0217at 219.525 kb on + strand, within Synpcc7942_0217at 219.552 kb on + strand, within Synpcc7942_0217at 219.558 kb on + strand, within Synpcc7942_0217at 219.566 kb on - strand, within Synpcc7942_0217at 219.583 kb on + strand, within Synpcc7942_0217at 219.602 kb on - strand, within Synpcc7942_0217at 219.613 kb on + strand, within Synpcc7942_0217at 219.641 kb on + strand, within Synpcc7942_0217at 219.647 kb on + strandat 219.649 kb on - strand, within Synpcc7942_0217at 219.681 kb on + strand, within Synpcc7942_0217at 219.688 kb on - strand, within Synpcc7942_0217at 219.692 kb on + strand, within Synpcc7942_0217at 219.694 kb on - strand, within Synpcc7942_0217at 219.698 kb on + strand, within Synpcc7942_0217at 219.733 kb on + strand, within Synpcc7942_0217at 219.733 kb on + strand, within Synpcc7942_0217at 219.733 kb on + strand, within Synpcc7942_0217at 219.733 kb on + strand, within Synpcc7942_0217at 219.736 kb on - strand, within Synpcc7942_0217at 219.741 kb on - strandat 219.741 kb on - strand, within Synpcc7942_0217at 219.743 kb on + strand, within Synpcc7942_0217at 219.755 kb on + strand, within Synpcc7942_0217at 219.755 kb on + strand, within Synpcc7942_0217at 219.755 kb on + strand, within Synpcc7942_0217at 219.758 kb on - strand, within Synpcc7942_0217at 219.758 kb on - strand, within Synpcc7942_0217at 219.760 kb on + strand, within Synpcc7942_0217at 219.760 kb on + strand, within Synpcc7942_0217at 219.760 kb on + strand, within Synpcc7942_0217at 219.760 kb on + strand, within Synpcc7942_0217at 219.763 kb on - strand, within Synpcc7942_0217at 219.763 kb on - strand, within Synpcc7942_0217at 219.795 kb on + strand, within Synpcc7942_0217at 219.795 kb on + strand, within Synpcc7942_0217at 219.804 kb on - strandat 219.850 kb on - strandat 219.866 kb on + strandat 219.874 kb on - strandat 219.899 kb on - strandat 219.899 kb on - strandat 220.021 kb on + strandat 220.030 kb on - strandat 220.051 kb on - strand, within Synpcc7942_0218at 220.051 kb on - strand, within Synpcc7942_0218at 220.188 kb on - strandat 220.222 kb on + strandat 220.230 kb on - strandat 220.246 kb on + strandat 220.251 kb on + strandat 220.259 kb on - strandat 220.314 kb on + strandat 220.314 kb on + strandat 220.319 kb on + strandat 220.319 kb on + strandat 220.319 kb on + strandat 220.319 kb on + strandat 220.319 kb on + strandat 220.319 kb on + strandat 220.322 kb on - strandat 220.327 kb on - strandat 220.327 kb on - strandat 220.334 kb on - strandat 220.346 kb on - strandat 220.372 kb on + strand, within Synpcc7942_0219at 220.374 kb on - strand, within Synpcc7942_0219at 220.374 kb on - strand, within Synpcc7942_0219at 220.377 kb on + strand, within Synpcc7942_0219at 220.463 kb on + strand, within Synpcc7942_0219at 220.468 kb on + strand, within Synpcc7942_0219at 220.484 kb on - strand, within Synpcc7942_0219at 220.490 kb on - strand, within Synpcc7942_0219at 220.542 kb on - strand, within Synpcc7942_0219at 220.548 kb on - strand, within Synpcc7942_0219at 220.563 kb on - strand, within Synpcc7942_0219at 220.577 kb on + strand, within Synpcc7942_0219at 220.611 kb on - strandat 220.631 kb on + strandat 220.631 kb on + strandat 220.631 kb on + strandat 220.631 kb on - strandat 220.631 kb on - strandat 220.639 kb on - strandat 220.639 kb on - strandat 220.639 kb on - strandat 220.674 kb on + strandat 220.674 kb on + strandat 220.682 kb on - strandat 220.682 kb on - strandat 220.692 kb on - strandat 220.706 kb on + strandat 220.714 kb on - strandat 220.719 kb on - strand, within minDat 220.732 kb on + strand, within minDat 220.761 kb on - strand, within minDat 220.786 kb on - strand, within minDat 220.795 kb on - strand, within minDat 220.814 kb on - strand, within minDat 220.881 kb on + strand, within minDat 220.903 kb on + strand, within minDat 220.943 kb on - strand, within minDat 221.035 kb on + strand, within minDat 221.056 kb on - strand, within minDat 221.066 kb on + strand, within minDat 221.074 kb on - strand, within minDat 221.122 kb on - strand, within minDat 221.158 kb on - strand, within minDat 221.159 kb on + strand, within minDat 221.175 kb on - strand, within minD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0003125 mg/ml
remove
219,105 - +0.2
219,105 - +0.7
219,164 + +1.7
219,195 - Synpcc7942_0217 0.11 -1.7
219,214 + Synpcc7942_0217 0.13 +0.9
219,221 + Synpcc7942_0217 0.14 +1.7
219,221 + Synpcc7942_0217 0.14 +3.1
219,221 + Synpcc7942_0217 0.14 +1.8
219,224 - Synpcc7942_0217 0.15 -0.1
219,229 - Synpcc7942_0217 0.15 +2.0
219,229 - Synpcc7942_0217 0.15 +2.2
219,229 - Synpcc7942_0217 0.15 +1.6
219,229 - Synpcc7942_0217 0.15 +0.4
219,254 + Synpcc7942_0217 0.19 +0.0
219,267 - Synpcc7942_0217 0.20 -1.4
219,362 + Synpcc7942_0217 0.33 +4.0
219,369 + Synpcc7942_0217 0.34 -0.2
219,369 + Synpcc7942_0217 0.34 -0.3
219,369 + Synpcc7942_0217 0.34 +1.8
219,370 - Synpcc7942_0217 0.34 +2.2
219,377 - Synpcc7942_0217 0.35 +2.2
219,412 + Synpcc7942_0217 0.39 -0.8
219,430 + Synpcc7942_0217 0.42 +1.5
219,433 - Synpcc7942_0217 0.42 +1.0
219,444 + Synpcc7942_0217 0.44 +0.9
219,444 + Synpcc7942_0217 0.44 +0.5
219,452 - Synpcc7942_0217 0.45 +0.9
219,500 - Synpcc7942_0217 0.51 +2.4
219,500 - Synpcc7942_0217 0.51 -1.7
219,502 + Synpcc7942_0217 0.51 -1.9
219,502 + Synpcc7942_0217 0.51 +1.2
219,505 - Synpcc7942_0217 0.52 -0.6
219,509 + Synpcc7942_0217 0.52 +0.5
219,510 - Synpcc7942_0217 0.52 +0.6
219,525 + Synpcc7942_0217 0.54 -0.9
219,552 + Synpcc7942_0217 0.58 -2.4
219,558 + Synpcc7942_0217 0.59 +1.4
219,566 - Synpcc7942_0217 0.60 +1.6
219,583 + Synpcc7942_0217 0.62 +1.9
219,602 - Synpcc7942_0217 0.64 +1.3
219,613 + Synpcc7942_0217 0.66 +1.8
219,641 + Synpcc7942_0217 0.70 +1.0
219,647 + +1.5
219,649 - Synpcc7942_0217 0.71 +1.3
219,681 + Synpcc7942_0217 0.75 +1.7
219,688 - Synpcc7942_0217 0.76 -0.6
219,692 + Synpcc7942_0217 0.76 +1.5
219,694 - Synpcc7942_0217 0.77 +0.0
219,698 + Synpcc7942_0217 0.77 +2.4
219,733 + Synpcc7942_0217 0.82 +1.4
219,733 + Synpcc7942_0217 0.82 +1.2
219,733 + Synpcc7942_0217 0.82 +0.2
219,733 + Synpcc7942_0217 0.82 +0.6
219,736 - Synpcc7942_0217 0.82 +1.2
219,741 - +1.2
219,741 - Synpcc7942_0217 0.83 +0.5
219,743 + Synpcc7942_0217 0.83 +0.4
219,755 + Synpcc7942_0217 0.85 +1.9
219,755 + Synpcc7942_0217 0.85 +1.2
219,755 + Synpcc7942_0217 0.85 +0.9
219,758 - Synpcc7942_0217 0.85 +0.5
219,758 - Synpcc7942_0217 0.85 -0.2
219,760 + Synpcc7942_0217 0.85 +1.7
219,760 + Synpcc7942_0217 0.85 +0.7
219,760 + Synpcc7942_0217 0.85 +0.2
219,760 + Synpcc7942_0217 0.85 +2.2
219,763 - Synpcc7942_0217 0.86 +1.6
219,763 - Synpcc7942_0217 0.86 +0.2
219,795 + Synpcc7942_0217 0.90 +1.3
219,795 + Synpcc7942_0217 0.90 +3.2
219,804 - +2.2
219,850 - -0.4
219,866 + -0.4
219,874 - -2.2
219,899 - +0.6
219,899 - +2.0
220,021 + -0.8
220,030 - -1.4
220,051 - Synpcc7942_0218 0.16 -0.8
220,051 - Synpcc7942_0218 0.16 -2.5
220,188 - -1.8
220,222 + +0.6
220,230 - +1.3
220,246 + +0.9
220,251 + -1.1
220,259 - +0.2
220,314 + -0.2
220,314 + -2.6
220,319 + +1.5
220,319 + -1.4
220,319 + +0.0
220,319 + -0.6
220,319 + +0.7
220,319 + -2.2
220,322 - -0.7
220,327 - +1.8
220,327 - +0.4
220,334 - -0.6
220,346 - +1.6
220,372 + Synpcc7942_0219 0.17 -1.4
220,374 - Synpcc7942_0219 0.18 +1.5
220,374 - Synpcc7942_0219 0.18 +1.6
220,377 + Synpcc7942_0219 0.19 -0.4
220,463 + Synpcc7942_0219 0.46 +1.8
220,468 + Synpcc7942_0219 0.47 -0.4
220,484 - Synpcc7942_0219 0.52 +0.2
220,490 - Synpcc7942_0219 0.54 +0.4
220,542 - Synpcc7942_0219 0.70 -0.6
220,548 - Synpcc7942_0219 0.72 -2.5
220,563 - Synpcc7942_0219 0.77 +0.2
220,577 + Synpcc7942_0219 0.81 +0.2
220,611 - +2.5
220,631 + +1.8
220,631 + +0.9
220,631 + -0.6
220,631 - +1.9
220,631 - -1.6
220,639 - -1.8
220,639 - +1.4
220,639 - -1.8
220,674 + +2.8
220,674 + -0.8
220,682 - -1.6
220,682 - +1.6
220,692 - +0.4
220,706 + -0.0
220,714 - -2.3
220,719 - minD Synpcc7942_0220 0.11 -1.2
220,732 + minD Synpcc7942_0220 0.12 +1.7
220,761 - minD Synpcc7942_0220 0.16 -1.8
220,786 - minD Synpcc7942_0220 0.19 +3.3
220,795 - minD Synpcc7942_0220 0.21 +0.3
220,814 - minD Synpcc7942_0220 0.23 +1.5
220,881 + minD Synpcc7942_0220 0.32 -1.1
220,903 + minD Synpcc7942_0220 0.35 -1.4
220,943 - minD Synpcc7942_0220 0.40 +2.6
221,035 + minD Synpcc7942_0220 0.52 +1.0
221,056 - minD Synpcc7942_0220 0.55 -3.2
221,066 + minD Synpcc7942_0220 0.56 -1.7
221,074 - minD Synpcc7942_0220 0.57 -2.8
221,122 - minD Synpcc7942_0220 0.64 +1.6
221,158 - minD Synpcc7942_0220 0.68 -1.0
221,159 + minD Synpcc7942_0220 0.69 +0.7
221,175 - minD Synpcc7942_0220 0.71 +1.6

Or see this region's nucleotide sequence