Experiment: Rifampicin 0.0003125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pepP and Synpcc7942_0076 are separated by 2 nucleotides Synpcc7942_0076 and Synpcc7942_0077 are separated by 75 nucleotides Synpcc7942_0077 and Synpcc7942_0078 overlap by 4 nucleotides
Synpcc7942_0075: pepP - aminopeptidase P. Metallo peptidase. MEROPS family M24B, at 73,775 to 75,088
pepP
Synpcc7942_0076: Synpcc7942_0076 - extracellular solute-binding protein, family 3, at 75,091 to 75,852
_0076
Synpcc7942_0077: Synpcc7942_0077 - transcriptional regulator, XRE family, at 75,928 to 76,617
_0077
Synpcc7942_0078: Synpcc7942_0078 - hypothetical protein, at 76,614 to 77,063
_0078
Position (kb) 75
76 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 74.196 kb on + strand, within pepP at 74.240 kb on - strand, within pepP at 74.284 kb on - strand, within pepP at 74.345 kb on + strand, within pepP at 74.516 kb on - strand, within pepP at 74.637 kb on + strand, within pepP at 74.724 kb on + strand, within pepP at 74.755 kb on + strand, within pepP at 74.756 kb on + strand, within pepP at 74.833 kb on + strand, within pepP at 74.859 kb on + strand, within pepP at 74.924 kb on + strand, within pepP at 74.926 kb on + strand, within pepP at 74.934 kb on - strand, within pepP at 74.958 kb on - strand at 75.082 kb on - strand at 75.131 kb on + strand at 75.131 kb on + strand at 75.141 kb on + strand at 75.149 kb on - strand at 75.236 kb on + strand, within Synpcc7942_0076 at 75.236 kb on + strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.320 kb on + strand, within Synpcc7942_0076 at 75.328 kb on - strand, within Synpcc7942_0076 at 75.357 kb on + strand, within Synpcc7942_0076 at 75.357 kb on + strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.436 kb on + strand, within Synpcc7942_0076 at 75.436 kb on + strand, within Synpcc7942_0076 at 75.444 kb on - strand, within Synpcc7942_0076 at 75.446 kb on + strand at 75.446 kb on + strand, within Synpcc7942_0076 at 75.454 kb on - strand, within Synpcc7942_0076 at 75.454 kb on - strand, within Synpcc7942_0076 at 75.479 kb on - strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.534 kb on - strand at 75.534 kb on - strand, within Synpcc7942_0076 at 75.557 kb on - strand, within Synpcc7942_0076 at 75.693 kb on - strand, within Synpcc7942_0076 at 75.764 kb on - strand, within Synpcc7942_0076 at 75.791 kb on + strand at 75.799 kb on - strand at 75.799 kb on - strand at 75.996 kb on + strand at 75.999 kb on - strand, within Synpcc7942_0077 at 76.037 kb on - strand, within Synpcc7942_0077 at 76.037 kb on - strand, within Synpcc7942_0077 at 76.085 kb on + strand, within Synpcc7942_0077 at 76.093 kb on - strand, within Synpcc7942_0077 at 76.215 kb on - strand, within Synpcc7942_0077 at 76.243 kb on - strand, within Synpcc7942_0077 at 76.243 kb on - strand, within Synpcc7942_0077 at 76.243 kb on - strand, within Synpcc7942_0077 at 76.248 kb on - strand, within Synpcc7942_0077 at 76.252 kb on - strand, within Synpcc7942_0077 at 76.306 kb on + strand, within Synpcc7942_0077 at 76.315 kb on - strand, within Synpcc7942_0077 at 76.319 kb on - strand, within Synpcc7942_0077 at 76.333 kb on - strand, within Synpcc7942_0077 at 76.334 kb on + strand, within Synpcc7942_0077 at 76.334 kb on + strand, within Synpcc7942_0077 at 76.342 kb on - strand, within Synpcc7942_0077 at 76.404 kb on + strand, within Synpcc7942_0077 at 76.419 kb on + strand, within Synpcc7942_0077 at 76.420 kb on + strand, within Synpcc7942_0077 at 76.422 kb on - strand, within Synpcc7942_0077 at 76.497 kb on - strand, within Synpcc7942_0077 at 76.497 kb on - strand, within Synpcc7942_0077 at 76.532 kb on - strand, within Synpcc7942_0077 at 76.532 kb on - strand, within Synpcc7942_0077 at 76.566 kb on + strand at 76.574 kb on - strand at 76.619 kb on - strand at 76.626 kb on + strand at 76.640 kb on - strand at 76.674 kb on + strand, within Synpcc7942_0078 at 76.677 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.756 kb on - strand, within Synpcc7942_0078 at 76.770 kb on + strand, within Synpcc7942_0078 at 76.775 kb on + strand, within Synpcc7942_0078 at 76.775 kb on + strand, within Synpcc7942_0078 at 76.775 kb on + strand, within Synpcc7942_0078 at 76.783 kb on - strand, within Synpcc7942_0078 at 76.796 kb on + strand, within Synpcc7942_0078 at 76.796 kb on + strand, within Synpcc7942_0078 at 76.797 kb on + strand, within Synpcc7942_0078
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0003125 mg/ml remove 74,196 + pepP Synpcc7942_0075 0.32 -1.4 74,240 - pepP Synpcc7942_0075 0.35 -4.5 74,284 - pepP Synpcc7942_0075 0.39 -1.2 74,345 + pepP Synpcc7942_0075 0.43 -1.8 74,516 - pepP Synpcc7942_0075 0.56 +0.2 74,637 + pepP Synpcc7942_0075 0.66 -2.2 74,724 + pepP Synpcc7942_0075 0.72 -1.4 74,755 + pepP Synpcc7942_0075 0.75 -2.2 74,756 + pepP Synpcc7942_0075 0.75 -2.2 74,833 + pepP Synpcc7942_0075 0.81 -2.2 74,859 + pepP Synpcc7942_0075 0.82 -2.2 74,924 + pepP Synpcc7942_0075 0.87 -1.4 74,926 + pepP Synpcc7942_0075 0.88 +0.2 74,934 - pepP Synpcc7942_0075 0.88 -1.4 74,958 - -4.5 75,082 - +0.2 75,131 + -1.4 75,131 + +0.1 75,141 + -0.8 75,149 - -0.6 75,236 + Synpcc7942_0076 0.19 -1.3 75,236 + Synpcc7942_0076 0.19 +1.2 75,244 - Synpcc7942_0076 0.20 -0.3 75,244 - Synpcc7942_0076 0.20 +0.2 75,244 - Synpcc7942_0076 0.20 -3.0 75,320 + Synpcc7942_0076 0.30 -0.8 75,328 - Synpcc7942_0076 0.31 +1.0 75,357 + Synpcc7942_0076 0.35 -0.4 75,357 + Synpcc7942_0076 0.35 -0.8 75,397 - Synpcc7942_0076 0.40 -0.5 75,397 - Synpcc7942_0076 0.40 -2.4 75,397 - Synpcc7942_0076 0.40 -1.4 75,436 + Synpcc7942_0076 0.45 -0.6 75,436 + Synpcc7942_0076 0.45 -2.2 75,444 - Synpcc7942_0076 0.46 +0.2 75,446 + +0.2 75,446 + Synpcc7942_0076 0.47 -0.8 75,454 - Synpcc7942_0076 0.48 +0.9 75,454 - Synpcc7942_0076 0.48 -2.8 75,479 - Synpcc7942_0076 0.51 +0.9 75,526 + Synpcc7942_0076 0.57 -1.4 75,526 + Synpcc7942_0076 0.57 -0.8 75,526 + Synpcc7942_0076 0.57 -0.4 75,534 - +0.2 75,534 - Synpcc7942_0076 0.58 -1.4 75,557 - Synpcc7942_0076 0.61 +3.0 75,693 - Synpcc7942_0076 0.79 -0.1 75,764 - Synpcc7942_0076 0.88 +0.4 75,791 + -0.5 75,799 - +1.2 75,799 - +1.6 75,996 + -1.8 75,999 - Synpcc7942_0077 0.10 -1.8 76,037 - Synpcc7942_0077 0.16 +1.2 76,037 - Synpcc7942_0077 0.16 +0.4 76,085 + Synpcc7942_0077 0.23 +2.0 76,093 - Synpcc7942_0077 0.24 +0.2 76,215 - Synpcc7942_0077 0.42 +0.7 76,243 - Synpcc7942_0077 0.46 +1.9 76,243 - Synpcc7942_0077 0.46 -1.8 76,243 - Synpcc7942_0077 0.46 +0.9 76,248 - Synpcc7942_0077 0.46 +1.3 76,252 - Synpcc7942_0077 0.47 +0.2 76,306 + Synpcc7942_0077 0.55 +2.4 76,315 - Synpcc7942_0077 0.56 -1.0 76,319 - Synpcc7942_0077 0.57 -0.3 76,333 - Synpcc7942_0077 0.59 +1.4 76,334 + Synpcc7942_0077 0.59 +0.3 76,334 + Synpcc7942_0077 0.59 -1.4 76,342 - Synpcc7942_0077 0.60 -1.4 76,404 + Synpcc7942_0077 0.69 +2.2 76,419 + Synpcc7942_0077 0.71 +1.7 76,420 + Synpcc7942_0077 0.71 -1.4 76,422 - Synpcc7942_0077 0.72 -2.8 76,497 - Synpcc7942_0077 0.82 -1.8 76,497 - Synpcc7942_0077 0.82 -0.4 76,532 - Synpcc7942_0077 0.88 -0.7 76,532 - Synpcc7942_0077 0.88 +1.2 76,566 + +0.2 76,574 - -1.4 76,619 - -0.6 76,626 + +1.2 76,640 - -0.8 76,674 + Synpcc7942_0078 0.13 -0.3 76,677 + Synpcc7942_0078 0.14 -3.2 76,743 + Synpcc7942_0078 0.29 +0.8 76,743 + Synpcc7942_0078 0.29 +1.0 76,743 + Synpcc7942_0078 0.29 -2.6 76,743 + Synpcc7942_0078 0.29 -2.6 76,743 + Synpcc7942_0078 0.29 +0.9 76,743 + Synpcc7942_0078 0.29 +0.1 76,743 + +3.0 76,743 + Synpcc7942_0078 0.29 -0.2 76,743 + Synpcc7942_0078 0.29 +0.7 76,751 - Synpcc7942_0078 0.30 +0.7 76,751 - Synpcc7942_0078 0.30 +0.4 76,751 - Synpcc7942_0078 0.30 +0.2 76,751 - Synpcc7942_0078 0.30 -1.6 76,751 - Synpcc7942_0078 0.30 -0.4 76,751 - Synpcc7942_0078 0.30 -0.8 76,751 - Synpcc7942_0078 0.30 -0.4 76,751 - Synpcc7942_0078 0.30 -0.4 76,756 - Synpcc7942_0078 0.32 +1.6 76,770 + Synpcc7942_0078 0.35 -0.7 76,775 + Synpcc7942_0078 0.36 +0.4 76,775 + Synpcc7942_0078 0.36 -2.4 76,775 + Synpcc7942_0078 0.36 +0.6 76,783 - Synpcc7942_0078 0.38 -1.2 76,796 + Synpcc7942_0078 0.40 +1.5 76,796 + Synpcc7942_0078 0.40 -1.8 76,797 + Synpcc7942_0078 0.41 +0.7
Or see this region's nucleotide sequence