Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0049

Experiment: Rifampicin 0.0003125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.0003125 mg/ml
48,556	+		Synpcc7942_0047	0.86	+0.2
48,579	+		Synpcc7942_0047	0.87	-0.9
48,586	+		Synpcc7942_0047	0.87	+0.5
48,626	+		Synpcc7942_0047	0.89	-1.0
48,632	-		Synpcc7942_0047	0.89	+0.9
48,634	-		Synpcc7942_0047	0.90	+0.7
48,643	+		Synpcc7942_0047	0.90	+1.4
48,693	-				-0.3
48,706	-				+0.1
48,710	-				+0.0
48,722	+				-0.8
48,845	+				-0.1
49,092	-		Synpcc7942_0048	0.38	-1.4
49,382	-				+1.2
49,650	+	pilA	Synpcc7942_0049	0.23	-1.8
49,680	+	pilA	Synpcc7942_0049	0.30	-2.2
49,688	-	pilA	Synpcc7942_0049	0.32	-0.8
49,698	-	pilA	Synpcc7942_0049	0.34	-0.8
49,809	+	pilA	Synpcc7942_0049	0.60	-1.7
49,822	-	pilA	Synpcc7942_0049	0.63	-0.8
49,995	-				-1.7
50,013	-				-1.3
50,022	+				-0.8
50,107	-				+2.7
50,124	+				+0.2
50,191	+				+0.3
50,207	+				-0.8
50,207	+				-2.2
50,207	+				+0.4
50,212	+				-0.1
50,215	-				-1.8
50,215	-				+0.2
50,220	-				+0.7
50,231	+				+1.7
50,239	-				+1.2
50,301	+				+0.0
50,301	+				-2.2
50,309	-				+0.4
50,372	+		Synpcc7942_0050	0.12	+0.9
50,372	+		Synpcc7942_0050	0.12	-2.8
50,372	+		Synpcc7942_0050	0.12	-1.4
50,562	-		Synpcc7942_0050	0.19	+1.2
50,577	-		Synpcc7942_0050	0.20	-0.7
50,702	-		Synpcc7942_0050	0.25	-0.7
50,871	-		Synpcc7942_0050	0.31	+0.2
50,915	-		Synpcc7942_0050	0.33	+1.2
50,915	-		Synpcc7942_0050	0.33	-0.9
50,930	+		Synpcc7942_0050	0.34	+0.4
50,931	-		Synpcc7942_0050	0.34	-1.1
50,948	+		Synpcc7942_0050	0.34	+1.1
50,956	-		Synpcc7942_0050	0.35	+2.2
50,981	+		Synpcc7942_0050	0.36	+0.3