Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27510

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27500 and BWI76_RS27505 are separated by 150 nucleotidesBWI76_RS27505 and BWI76_RS27510 are separated by 448 nucleotidesBWI76_RS27510 and BWI76_RS27515 are separated by 21 nucleotides BWI76_RS27500: BWI76_RS27500 - sulfate transporter subunit, at 5,705,614 to 5,706,603 _RS27500 BWI76_RS27505: BWI76_RS27505 - septal ring assembly protein ZapB, at 5,706,754 to 5,706,993 _RS27505 BWI76_RS27510: BWI76_RS27510 - aquaporin, at 5,707,442 to 5,708,293 _RS27510 BWI76_RS27515: BWI76_RS27515 - glycerol kinase, at 5,708,315 to 5,709,826 _RS27515 Position (kb) 5707 5708 5709Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5706.584 kb on - strandat 5706.585 kb on - strandat 5706.585 kb on - strandat 5706.603 kb on + strandat 5706.624 kb on + strandat 5706.635 kb on + strandat 5706.712 kb on + strandat 5706.717 kb on + strandat 5706.772 kb on + strandat 5706.780 kb on - strand, within BWI76_RS27505at 5706.810 kb on - strand, within BWI76_RS27505at 5706.866 kb on - strand, within BWI76_RS27505at 5706.930 kb on - strand, within BWI76_RS27505at 5706.989 kb on - strandat 5706.994 kb on + strandat 5706.994 kb on + strandat 5707.012 kb on - strandat 5707.087 kb on - strandat 5707.092 kb on - strandat 5707.534 kb on + strand, within BWI76_RS27510at 5707.625 kb on - strand, within BWI76_RS27510at 5707.647 kb on - strand, within BWI76_RS27510at 5707.656 kb on + strand, within BWI76_RS27510at 5707.711 kb on - strand, within BWI76_RS27510at 5707.793 kb on + strand, within BWI76_RS27510at 5708.038 kb on - strand, within BWI76_RS27510at 5708.177 kb on - strand, within BWI76_RS27510at 5708.208 kb on + strandat 5708.216 kb on - strandat 5708.226 kb on - strandat 5708.268 kb on - strandat 5708.275 kb on + strandat 5708.283 kb on - strandat 5708.283 kb on - strandat 5708.283 kb on - strandat 5708.288 kb on + strandat 5708.358 kb on - strandat 5708.454 kb on + strandat 5708.456 kb on - strandat 5708.465 kb on + strandat 5708.465 kb on + strandat 5708.478 kb on - strand, within BWI76_RS27515at 5708.487 kb on + strand, within BWI76_RS27515at 5708.487 kb on + strand, within BWI76_RS27515at 5708.487 kb on + strand, within BWI76_RS27515at 5708.487 kb on + strand, within BWI76_RS27515at 5708.487 kb on + strand, within BWI76_RS27515at 5708.487 kb on + strand, within BWI76_RS27515at 5708.487 kb on + strand, within BWI76_RS27515at 5708.487 kb on + strand, within BWI76_RS27515at 5708.487 kb on + strand, within BWI76_RS27515at 5708.487 kb on + strand, within BWI76_RS27515at 5708.487 kb on + strand, within BWI76_RS27515at 5708.487 kb on + strand, within BWI76_RS27515at 5708.495 kb on - strand, within BWI76_RS27515at 5708.495 kb on - strand, within BWI76_RS27515at 5708.495 kb on - strandat 5708.495 kb on - strand, within BWI76_RS27515at 5708.495 kb on - strand, within BWI76_RS27515at 5708.495 kb on - strand, within BWI76_RS27515at 5708.495 kb on - strand, within BWI76_RS27515at 5708.504 kb on + strand, within BWI76_RS27515at 5708.517 kb on - strand, within BWI76_RS27515at 5708.667 kb on - strand, within BWI76_RS27515at 5708.673 kb on + strand, within BWI76_RS27515at 5708.808 kb on - strand, within BWI76_RS27515at 5708.861 kb on + strand, within BWI76_RS27515at 5708.874 kb on - strand, within BWI76_RS27515at 5708.984 kb on + strand, within BWI76_RS27515at 5708.995 kb on + strand, within BWI76_RS27515at 5709.071 kb on + strand, within BWI76_RS27515at 5709.084 kb on - strand, within BWI76_RS27515at 5709.131 kb on - strand, within BWI76_RS27515at 5709.173 kb on + strand, within BWI76_RS27515

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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5,706,584 - +0.7
5,706,585 - +1.8
5,706,585 - +0.6
5,706,603 + -0.4
5,706,624 + -1.5
5,706,635 + +0.7
5,706,712 + +0.3
5,706,717 + -0.7
5,706,772 + -0.1
5,706,780 - BWI76_RS27505 0.11 +0.8
5,706,810 - BWI76_RS27505 0.23 -1.7
5,706,866 - BWI76_RS27505 0.47 +0.2
5,706,930 - BWI76_RS27505 0.73 +0.2
5,706,989 - +1.1
5,706,994 + +0.2
5,706,994 + -0.9
5,707,012 - +0.0
5,707,087 - +0.0
5,707,092 - +1.1
5,707,534 + BWI76_RS27510 0.11 -1.0
5,707,625 - BWI76_RS27510 0.21 +0.7
5,707,647 - BWI76_RS27510 0.24 +0.1
5,707,656 + BWI76_RS27510 0.25 -1.3
5,707,711 - BWI76_RS27510 0.32 +0.4
5,707,793 + BWI76_RS27510 0.41 -1.7
5,708,038 - BWI76_RS27510 0.70 -1.7
5,708,177 - BWI76_RS27510 0.86 -0.8
5,708,208 + -0.1
5,708,216 - -1.4
5,708,226 - -0.2
5,708,268 - -2.9
5,708,275 + -0.5
5,708,283 - -0.7
5,708,283 - -0.5
5,708,283 - -0.4
5,708,288 + -0.9
5,708,358 - -0.5
5,708,454 + -1.7
5,708,456 - -1.1
5,708,465 + -0.7
5,708,465 + -2.1
5,708,478 - BWI76_RS27515 0.11 -1.4
5,708,487 + BWI76_RS27515 0.11 -0.3
5,708,487 + BWI76_RS27515 0.11 +1.8
5,708,487 + BWI76_RS27515 0.11 -0.1
5,708,487 + BWI76_RS27515 0.11 +0.9
5,708,487 + BWI76_RS27515 0.11 -0.9
5,708,487 + BWI76_RS27515 0.11 +0.1
5,708,487 + BWI76_RS27515 0.11 -0.8
5,708,487 + BWI76_RS27515 0.11 -0.8
5,708,487 + BWI76_RS27515 0.11 -1.9
5,708,487 + BWI76_RS27515 0.11 -1.6
5,708,487 + BWI76_RS27515 0.11 -0.9
5,708,487 + BWI76_RS27515 0.11 -1.1
5,708,495 - BWI76_RS27515 0.12 -1.0
5,708,495 - BWI76_RS27515 0.12 -0.4
5,708,495 - +1.1
5,708,495 - BWI76_RS27515 0.12 +0.6
5,708,495 - BWI76_RS27515 0.12 -2.4
5,708,495 - BWI76_RS27515 0.12 -0.5
5,708,495 - BWI76_RS27515 0.12 -0.2
5,708,504 + BWI76_RS27515 0.12 -1.0
5,708,517 - BWI76_RS27515 0.13 -0.1
5,708,667 - BWI76_RS27515 0.23 -0.6
5,708,673 + BWI76_RS27515 0.24 -0.7
5,708,808 - BWI76_RS27515 0.33 -0.6
5,708,861 + BWI76_RS27515 0.36 -0.4
5,708,874 - BWI76_RS27515 0.37 -0.5
5,708,984 + BWI76_RS27515 0.44 -1.3
5,708,995 + BWI76_RS27515 0.45 +0.1
5,709,071 + BWI76_RS27515 0.50 -1.4
5,709,084 - BWI76_RS27515 0.51 +0.2
5,709,131 - BWI76_RS27515 0.54 -0.8
5,709,173 + BWI76_RS27515 0.57 -0.8

Or see this region's nucleotide sequence