Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24320

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS24315 and BWI76_RS24320 are separated by 84 nucleotidesBWI76_RS24320 and BWI76_RS24325 are separated by 191 nucleotides BWI76_RS24315: BWI76_RS24315 - cell division protein FtsP, at 5,066,951 to 5,068,363 _RS24315 BWI76_RS24320: BWI76_RS24320 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 5,068,448 to 5,069,185 _RS24320 BWI76_RS24325: BWI76_RS24325 - DNA topoisomerase IV subunit A, at 5,069,377 to 5,071,635 _RS24325 Position (kb) 5068 5069 5070Strain fitness (log2 ratio) -1 0 1 2at 5067.554 kb on - strand, within BWI76_RS24315at 5067.656 kb on - strand, within BWI76_RS24315at 5067.767 kb on + strand, within BWI76_RS24315at 5067.775 kb on - strand, within BWI76_RS24315at 5067.893 kb on - strand, within BWI76_RS24315at 5068.058 kb on - strand, within BWI76_RS24315at 5068.135 kb on + strand, within BWI76_RS24315at 5068.279 kb on - strandat 5068.326 kb on - strandat 5069.213 kb on + strandat 5069.221 kb on - strandat 5069.227 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
5,067,554 - BWI76_RS24315 0.43 +0.3
5,067,656 - BWI76_RS24315 0.50 -0.4
5,067,767 + BWI76_RS24315 0.58 +0.3
5,067,775 - BWI76_RS24315 0.58 +0.0
5,067,893 - BWI76_RS24315 0.67 +0.6
5,068,058 - BWI76_RS24315 0.78 -0.3
5,068,135 + BWI76_RS24315 0.84 +2.0
5,068,279 - -0.1
5,068,326 - -1.0
5,069,213 + +0.1
5,069,221 - +0.1
5,069,227 + +0.3

Or see this region's nucleotide sequence