Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22935

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS22930 and BWI76_RS22935 are separated by 1 nucleotidesBWI76_RS22935 and BWI76_RS22940 are separated by 57 nucleotidesBWI76_RS22940 and BWI76_RS22945 are separated by 61 nucleotides BWI76_RS22930: BWI76_RS22930 - L-fuculokinase (EC 2.7.1.51) (from data), at 4,788,541 to 4,789,959 _RS22930 BWI76_RS22935: BWI76_RS22935 - L-fucose mutarotase, at 4,789,961 to 4,790,383 _RS22935 BWI76_RS22940: BWI76_RS22940 - DNA-binding transcriptional activator FucR, at 4,790,441 to 4,791,151 _RS22940 BWI76_RS22945: BWI76_RS22945 - 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM, at 4,791,213 to 4,792,313 _RS22945 Position (kb) 4789 4790 4791Strain fitness (log2 ratio) -2 -1 0 1at 4789.289 kb on - strand, within BWI76_RS22930at 4789.302 kb on + strand, within BWI76_RS22930at 4789.490 kb on - strand, within BWI76_RS22930at 4789.680 kb on + strand, within BWI76_RS22930at 4789.944 kb on + strandat 4790.064 kb on - strand, within BWI76_RS22935at 4790.311 kb on - strand, within BWI76_RS22935at 4790.564 kb on + strand, within BWI76_RS22940at 4790.920 kb on + strand, within BWI76_RS22940at 4790.971 kb on - strand, within BWI76_RS22940at 4791.258 kb on + strandat 4791.324 kb on - strand, within BWI76_RS22945

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
4,789,289 - BWI76_RS22930 0.53 -1.9
4,789,302 + BWI76_RS22930 0.54 -1.3
4,789,490 - BWI76_RS22930 0.67 -1.7
4,789,680 + BWI76_RS22930 0.80 -2.6
4,789,944 + -0.7
4,790,064 - BWI76_RS22935 0.24 -0.8
4,790,311 - BWI76_RS22935 0.83 -1.0
4,790,564 + BWI76_RS22940 0.17 -1.8
4,790,920 + BWI76_RS22940 0.67 -1.8
4,790,971 - BWI76_RS22940 0.75 -2.2
4,791,258 + -0.3
4,791,324 - BWI76_RS22945 0.10 -0.3

Or see this region's nucleotide sequence