Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22930

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS22925 and BWI76_RS22930 are separated by 93 nucleotidesBWI76_RS22930 and BWI76_RS22935 are separated by 1 nucleotidesBWI76_RS22935 and BWI76_RS22940 are separated by 57 nucleotides BWI76_RS22925: BWI76_RS22925 - L-fucose isomerase, at 4,786,672 to 4,788,447 _RS22925 BWI76_RS22930: BWI76_RS22930 - L-fuculokinase (EC 2.7.1.51) (from data), at 4,788,541 to 4,789,959 _RS22930 BWI76_RS22935: BWI76_RS22935 - L-fucose mutarotase, at 4,789,961 to 4,790,383 _RS22935 BWI76_RS22940: BWI76_RS22940 - DNA-binding transcriptional activator FucR, at 4,790,441 to 4,791,151 _RS22940 Position (kb) 4788 4789 4790Strain fitness (log2 ratio) -3 -2 -1 0 1at 4787.633 kb on - strand, within BWI76_RS22925at 4787.699 kb on - strand, within BWI76_RS22925at 4787.737 kb on + strand, within BWI76_RS22925at 4788.026 kb on - strand, within BWI76_RS22925at 4788.179 kb on + strand, within BWI76_RS22925at 4788.284 kb on - strandat 4788.300 kb on + strandat 4788.343 kb on - strandat 4788.570 kb on - strandat 4788.745 kb on + strand, within BWI76_RS22930at 4788.775 kb on + strand, within BWI76_RS22930at 4789.289 kb on - strand, within BWI76_RS22930at 4789.302 kb on + strand, within BWI76_RS22930at 4789.490 kb on - strand, within BWI76_RS22930at 4789.680 kb on + strand, within BWI76_RS22930at 4789.944 kb on + strandat 4790.064 kb on - strand, within BWI76_RS22935at 4790.311 kb on - strand, within BWI76_RS22935at 4790.564 kb on + strand, within BWI76_RS22940at 4790.920 kb on + strand, within BWI76_RS22940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
4,787,633 - BWI76_RS22925 0.54 -0.2
4,787,699 - BWI76_RS22925 0.58 -1.7
4,787,737 + BWI76_RS22925 0.60 -2.3
4,788,026 - BWI76_RS22925 0.76 -2.9
4,788,179 + BWI76_RS22925 0.85 -3.0
4,788,284 - -2.8
4,788,300 + -1.7
4,788,343 - -1.9
4,788,570 - -1.1
4,788,745 + BWI76_RS22930 0.14 -2.0
4,788,775 + BWI76_RS22930 0.16 -1.6
4,789,289 - BWI76_RS22930 0.53 -1.9
4,789,302 + BWI76_RS22930 0.54 -1.3
4,789,490 - BWI76_RS22930 0.67 -1.7
4,789,680 + BWI76_RS22930 0.80 -2.6
4,789,944 + -0.7
4,790,064 - BWI76_RS22935 0.24 -0.8
4,790,311 - BWI76_RS22935 0.83 -1.0
4,790,564 + BWI76_RS22940 0.17 -1.8
4,790,920 + BWI76_RS22940 0.67 -1.8

Or see this region's nucleotide sequence