Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22925 and BWI76_RS22930 are separated by 93 nucleotides BWI76_RS22930 and BWI76_RS22935 are separated by 1 nucleotides BWI76_RS22935 and BWI76_RS22940 are separated by 57 nucleotides
BWI76_RS22925: BWI76_RS22925 - L-fucose isomerase, at 4,786,672 to 4,788,447
_RS22925
BWI76_RS22930: BWI76_RS22930 - L-fuculokinase (EC 2.7.1.51) (from data) , at 4,788,541 to 4,789,959
_RS22930
BWI76_RS22935: BWI76_RS22935 - L-fucose mutarotase, at 4,789,961 to 4,790,383
_RS22935
BWI76_RS22940: BWI76_RS22940 - DNA-binding transcriptional activator FucR, at 4,790,441 to 4,791,151
_RS22940
Position (kb)
4788
4789
4790 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4787.633 kb on - strand, within BWI76_RS22925 at 4787.699 kb on - strand, within BWI76_RS22925 at 4787.737 kb on + strand, within BWI76_RS22925 at 4788.026 kb on - strand, within BWI76_RS22925 at 4788.179 kb on + strand, within BWI76_RS22925 at 4788.284 kb on - strand at 4788.300 kb on + strand at 4788.343 kb on - strand at 4788.570 kb on - strand at 4788.745 kb on + strand, within BWI76_RS22930 at 4788.775 kb on + strand, within BWI76_RS22930 at 4789.289 kb on - strand, within BWI76_RS22930 at 4789.302 kb on + strand, within BWI76_RS22930 at 4789.490 kb on - strand, within BWI76_RS22930 at 4789.680 kb on + strand, within BWI76_RS22930 at 4789.944 kb on + strand at 4790.064 kb on - strand, within BWI76_RS22935 at 4790.311 kb on - strand, within BWI76_RS22935 at 4790.564 kb on + strand, within BWI76_RS22940 at 4790.920 kb on + strand, within BWI76_RS22940
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 4,787,633 - BWI76_RS22925 0.54 -0.2 4,787,699 - BWI76_RS22925 0.58 -1.7 4,787,737 + BWI76_RS22925 0.60 -2.3 4,788,026 - BWI76_RS22925 0.76 -2.9 4,788,179 + BWI76_RS22925 0.85 -3.0 4,788,284 - -2.8 4,788,300 + -1.7 4,788,343 - -1.9 4,788,570 - -1.1 4,788,745 + BWI76_RS22930 0.14 -2.0 4,788,775 + BWI76_RS22930 0.16 -1.6 4,789,289 - BWI76_RS22930 0.53 -1.9 4,789,302 + BWI76_RS22930 0.54 -1.3 4,789,490 - BWI76_RS22930 0.67 -1.7 4,789,680 + BWI76_RS22930 0.80 -2.6 4,789,944 + -0.7 4,790,064 - BWI76_RS22935 0.24 -0.8 4,790,311 - BWI76_RS22935 0.83 -1.0 4,790,564 + BWI76_RS22940 0.17 -1.8 4,790,920 + BWI76_RS22940 0.67 -1.8
Or see this region's nucleotide sequence