Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21530 and BWI76_RS21535 are separated by 164 nucleotides BWI76_RS21535 and BWI76_RS21540 are separated by 18 nucleotides BWI76_RS21540 and BWI76_RS21545 are separated by 65 nucleotides BWI76_RS21545 and BWI76_RS21550 overlap by 36 nucleotides BWI76_RS21550 and BWI76_RS21555 are separated by 13 nucleotides
BWI76_RS21530: BWI76_RS21530 - signal recognition particle protein, at 4,507,675 to 4,509,042
_RS21530
BWI76_RS21535: BWI76_RS21535 - inner membrane protein YpjD, at 4,509,207 to 4,509,998
_RS21535
BWI76_RS21540: BWI76_RS21540 - membrane protein, at 4,510,017 to 4,511,306
_RS21540
BWI76_RS21545: BWI76_RS21545 - nucleotide exchange factor GrpE, at 4,511,372 to 4,511,962
_RS21545
BWI76_RS21550: BWI76_RS21550 - inorganic polyphosphate kinase, at 4,511,927 to 4,512,073
_RS21550
BWI76_RS21555: BWI76_RS21555 - NAD(+) kinase, at 4,512,087 to 4,512,965
_RS21555
Position (kb)
4510
4511
4512 Strain fitness (log2 ratio)
-1
0
1
2 at 4509.113 kb on - strand at 4509.113 kb on - strand at 4509.145 kb on + strand at 4509.160 kb on + strand at 4509.160 kb on + strand at 4509.168 kb on - strand at 4509.168 kb on - strand at 4509.232 kb on - strand at 4509.500 kb on - strand, within BWI76_RS21535 at 4509.529 kb on + strand, within BWI76_RS21535 at 4509.615 kb on + strand, within BWI76_RS21535 at 4509.633 kb on - strand, within BWI76_RS21535 at 4509.754 kb on + strand, within BWI76_RS21535 at 4509.777 kb on - strand, within BWI76_RS21535 at 4509.777 kb on - strand, within BWI76_RS21535 at 4509.799 kb on - strand, within BWI76_RS21535 at 4509.930 kb on - strand at 4509.964 kb on - strand at 4510.036 kb on - strand at 4510.073 kb on - strand at 4510.229 kb on - strand, within BWI76_RS21540 at 4510.277 kb on + strand, within BWI76_RS21540 at 4510.602 kb on + strand, within BWI76_RS21540 at 4510.833 kb on - strand, within BWI76_RS21540 at 4510.961 kb on + strand, within BWI76_RS21540 at 4510.969 kb on - strand, within BWI76_RS21540 at 4511.210 kb on + strand at 4511.218 kb on - strand at 4511.232 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 4,509,113 - +0.1 4,509,113 - +0.3 4,509,145 + +2.0 4,509,160 + -0.1 4,509,160 + -0.6 4,509,168 - -0.0 4,509,168 - +0.0 4,509,232 - -1.3 4,509,500 - BWI76_RS21535 0.37 +0.8 4,509,529 + BWI76_RS21535 0.41 +0.2 4,509,615 + BWI76_RS21535 0.52 +0.4 4,509,633 - BWI76_RS21535 0.54 -0.2 4,509,754 + BWI76_RS21535 0.69 -0.9 4,509,777 - BWI76_RS21535 0.72 -0.3 4,509,777 - BWI76_RS21535 0.72 -1.3 4,509,799 - BWI76_RS21535 0.75 +0.2 4,509,930 - -0.1 4,509,964 - +0.2 4,510,036 - +0.2 4,510,073 - +0.4 4,510,229 - BWI76_RS21540 0.16 +0.8 4,510,277 + BWI76_RS21540 0.20 +0.4 4,510,602 + BWI76_RS21540 0.45 +0.1 4,510,833 - BWI76_RS21540 0.63 -0.5 4,510,961 + BWI76_RS21540 0.73 +1.2 4,510,969 - BWI76_RS21540 0.74 +0.0 4,511,210 + +0.0 4,511,218 - -0.5 4,511,232 + +0.2
Or see this region's nucleotide sequence