Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21540

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21530 and BWI76_RS21535 are separated by 164 nucleotidesBWI76_RS21535 and BWI76_RS21540 are separated by 18 nucleotidesBWI76_RS21540 and BWI76_RS21545 are separated by 65 nucleotidesBWI76_RS21545 and BWI76_RS21550 overlap by 36 nucleotidesBWI76_RS21550 and BWI76_RS21555 are separated by 13 nucleotides BWI76_RS21530: BWI76_RS21530 - signal recognition particle protein, at 4,507,675 to 4,509,042 _RS21530 BWI76_RS21535: BWI76_RS21535 - inner membrane protein YpjD, at 4,509,207 to 4,509,998 _RS21535 BWI76_RS21540: BWI76_RS21540 - membrane protein, at 4,510,017 to 4,511,306 _RS21540 BWI76_RS21545: BWI76_RS21545 - nucleotide exchange factor GrpE, at 4,511,372 to 4,511,962 _RS21545 BWI76_RS21550: BWI76_RS21550 - inorganic polyphosphate kinase, at 4,511,927 to 4,512,073 _RS21550 BWI76_RS21555: BWI76_RS21555 - NAD(+) kinase, at 4,512,087 to 4,512,965 _RS21555 Position (kb) 4510 4511 4512Strain fitness (log2 ratio) -1 0 1 2at 4509.113 kb on - strandat 4509.113 kb on - strandat 4509.145 kb on + strandat 4509.160 kb on + strandat 4509.160 kb on + strandat 4509.168 kb on - strandat 4509.168 kb on - strandat 4509.232 kb on - strandat 4509.500 kb on - strand, within BWI76_RS21535at 4509.529 kb on + strand, within BWI76_RS21535at 4509.615 kb on + strand, within BWI76_RS21535at 4509.633 kb on - strand, within BWI76_RS21535at 4509.754 kb on + strand, within BWI76_RS21535at 4509.777 kb on - strand, within BWI76_RS21535at 4509.777 kb on - strand, within BWI76_RS21535at 4509.799 kb on - strand, within BWI76_RS21535at 4509.930 kb on - strandat 4509.964 kb on - strandat 4510.036 kb on - strandat 4510.073 kb on - strandat 4510.229 kb on - strand, within BWI76_RS21540at 4510.277 kb on + strand, within BWI76_RS21540at 4510.602 kb on + strand, within BWI76_RS21540at 4510.833 kb on - strand, within BWI76_RS21540at 4510.961 kb on + strand, within BWI76_RS21540at 4510.969 kb on - strand, within BWI76_RS21540at 4511.210 kb on + strandat 4511.218 kb on - strandat 4511.232 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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4,509,113 - +0.1
4,509,113 - +0.3
4,509,145 + +2.0
4,509,160 + -0.1
4,509,160 + -0.6
4,509,168 - -0.0
4,509,168 - +0.0
4,509,232 - -1.3
4,509,500 - BWI76_RS21535 0.37 +0.8
4,509,529 + BWI76_RS21535 0.41 +0.2
4,509,615 + BWI76_RS21535 0.52 +0.4
4,509,633 - BWI76_RS21535 0.54 -0.2
4,509,754 + BWI76_RS21535 0.69 -0.9
4,509,777 - BWI76_RS21535 0.72 -0.3
4,509,777 - BWI76_RS21535 0.72 -1.3
4,509,799 - BWI76_RS21535 0.75 +0.2
4,509,930 - -0.1
4,509,964 - +0.2
4,510,036 - +0.2
4,510,073 - +0.4
4,510,229 - BWI76_RS21540 0.16 +0.8
4,510,277 + BWI76_RS21540 0.20 +0.4
4,510,602 + BWI76_RS21540 0.45 +0.1
4,510,833 - BWI76_RS21540 0.63 -0.5
4,510,961 + BWI76_RS21540 0.73 +1.2
4,510,969 - BWI76_RS21540 0.74 +0.0
4,511,210 + +0.0
4,511,218 - -0.5
4,511,232 + +0.2

Or see this region's nucleotide sequence