Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21000

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20995 and BWI76_RS21000 are separated by 3 nucleotidesBWI76_RS21000 and BWI76_RS21005 are separated by 37 nucleotides BWI76_RS20995: BWI76_RS20995 - RNA degradosome polyphosphate kinase, at 4,390,251 to 4,392,311 _RS20995 BWI76_RS21000: BWI76_RS21000 - exopolyphosphatase, at 4,392,315 to 4,393,856 _RS21000 BWI76_RS21005: BWI76_RS21005 - sensor domain-containing phosphodiesterase, at 4,393,894 to 4,396,116 _RS21005 Position (kb) 4392 4393 4394Strain fitness (log2 ratio) -2 -1 0 1at 4391.642 kb on + strand, within BWI76_RS20995at 4392.555 kb on - strand, within BWI76_RS21000at 4392.635 kb on + strand, within BWI76_RS21000at 4393.187 kb on - strand, within BWI76_RS21000at 4393.289 kb on + strand, within BWI76_RS21000at 4393.289 kb on + strand, within BWI76_RS21000at 4393.367 kb on + strand, within BWI76_RS21000at 4393.395 kb on + strand, within BWI76_RS21000at 4393.662 kb on - strand, within BWI76_RS21000at 4393.692 kb on - strand, within BWI76_RS21000at 4393.716 kb on + strandat 4393.832 kb on + strandat 4393.878 kb on - strandat 4393.947 kb on - strandat 4393.948 kb on - strandat 4393.953 kb on - strandat 4393.964 kb on - strandat 4394.078 kb on + strandat 4394.079 kb on - strandat 4394.195 kb on - strand, within BWI76_RS21005at 4394.460 kb on + strand, within BWI76_RS21005at 4394.568 kb on - strand, within BWI76_RS21005at 4394.572 kb on + strand, within BWI76_RS21005at 4394.736 kb on - strand, within BWI76_RS21005at 4394.799 kb on - strand, within BWI76_RS21005at 4394.799 kb on - strand, within BWI76_RS21005at 4394.810 kb on + strand, within BWI76_RS21005

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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4,391,642 + BWI76_RS20995 0.67 -1.6
4,392,555 - BWI76_RS21000 0.16 -2.6
4,392,635 + BWI76_RS21000 0.21 -0.5
4,393,187 - BWI76_RS21000 0.57 -1.4
4,393,289 + BWI76_RS21000 0.63 +0.6
4,393,289 + BWI76_RS21000 0.63 -1.0
4,393,367 + BWI76_RS21000 0.68 -0.6
4,393,395 + BWI76_RS21000 0.70 -2.4
4,393,662 - BWI76_RS21000 0.87 -1.5
4,393,692 - BWI76_RS21000 0.89 +0.9
4,393,716 + -0.1
4,393,832 + +0.4
4,393,878 - +0.2
4,393,947 - +0.7
4,393,948 - -0.7
4,393,953 - -1.8
4,393,964 - +0.1
4,394,078 + -0.5
4,394,079 - -0.7
4,394,195 - BWI76_RS21005 0.14 -0.0
4,394,460 + BWI76_RS21005 0.25 +0.3
4,394,568 - BWI76_RS21005 0.30 +0.2
4,394,572 + BWI76_RS21005 0.30 -0.0
4,394,736 - BWI76_RS21005 0.38 -0.1
4,394,799 - BWI76_RS21005 0.41 -0.4
4,394,799 - BWI76_RS21005 0.41 +0.1
4,394,810 + BWI76_RS21005 0.41 +0.5

Or see this region's nucleotide sequence