Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20490

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20480 and BWI76_RS20485 are separated by 73 nucleotidesBWI76_RS20485 and BWI76_RS20490 are separated by 485 nucleotides BWI76_RS20480: BWI76_RS20480 - formate/nitrite transporter, at 4,287,534 to 4,288,430 _RS20480 BWI76_RS20485: BWI76_RS20485 - tRNA-Arg, at 4,288,504 to 4,288,575 _RS20485 BWI76_RS20490: BWI76_RS20490 - hypothetical protein, at 4,289,061 to 4,289,834 _RS20490 Position (kb) 4289 4290Strain fitness (log2 ratio) -2 -1 0 1 2at 4288.213 kb on - strand, within BWI76_RS20480at 4288.216 kb on + strand, within BWI76_RS20480at 4288.254 kb on + strand, within BWI76_RS20480at 4288.289 kb on - strand, within BWI76_RS20480at 4288.292 kb on + strand, within BWI76_RS20480at 4288.312 kb on - strand, within BWI76_RS20480at 4288.312 kb on - strand, within BWI76_RS20480at 4288.322 kb on + strand, within BWI76_RS20480at 4288.365 kb on - strandat 4288.377 kb on + strandat 4288.377 kb on + strandat 4288.447 kb on + strandat 4288.462 kb on + strandat 4288.462 kb on + strandat 4288.462 kb on + strandat 4288.463 kb on + strandat 4288.470 kb on - strandat 4288.470 kb on - strandat 4288.471 kb on - strandat 4288.578 kb on - strandat 4288.609 kb on + strandat 4288.611 kb on + strandat 4288.650 kb on + strandat 4288.650 kb on + strandat 4288.658 kb on - strandat 4288.658 kb on - strandat 4288.663 kb on - strandat 4288.701 kb on + strandat 4288.701 kb on + strandat 4288.709 kb on - strandat 4288.710 kb on + strandat 4288.710 kb on + strandat 4288.710 kb on - strandat 4288.728 kb on - strandat 4288.728 kb on - strandat 4288.811 kb on - strandat 4289.174 kb on - strand, within BWI76_RS20490at 4289.187 kb on - strandat 4289.187 kb on - strand, within BWI76_RS20490at 4289.219 kb on - strand, within BWI76_RS20490at 4289.298 kb on - strand, within BWI76_RS20490at 4289.504 kb on - strand, within BWI76_RS20490at 4289.649 kb on + strand, within BWI76_RS20490at 4289.657 kb on - strand, within BWI76_RS20490at 4289.657 kb on - strand, within BWI76_RS20490at 4289.880 kb on - strandat 4289.971 kb on - strandat 4289.971 kb on - strandat 4290.008 kb on + strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.046 kb on + strandat 4290.046 kb on + strandat 4290.091 kb on + strandat 4290.096 kb on + strandat 4290.096 kb on + strandat 4290.101 kb on + strandat 4290.101 kb on + strandat 4290.102 kb on + strandat 4290.135 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.155 kb on + strandat 4290.155 kb on + strandat 4290.163 kb on - strandat 4290.164 kb on - strandat 4290.164 kb on - strandat 4290.166 kb on + strandat 4290.169 kb on - strandat 4290.188 kb on - strandat 4290.194 kb on + strandat 4290.288 kb on + strandat 4290.288 kb on + strandat 4290.289 kb on + strandat 4290.289 kb on + strandat 4290.289 kb on + strandat 4290.291 kb on + strandat 4290.291 kb on + strandat 4290.291 kb on + strandat 4290.291 kb on + strandat 4290.297 kb on - strandat 4290.299 kb on - strandat 4290.299 kb on - strandat 4290.306 kb on + strandat 4290.315 kb on + strandat 4290.322 kb on + strandat 4290.322 kb on - strandat 4290.323 kb on - strandat 4290.334 kb on + strandat 4290.369 kb on + strandat 4290.369 kb on + strandat 4290.377 kb on - strandat 4290.377 kb on - strandat 4290.377 kb on - strandat 4290.377 kb on - strandat 4290.386 kb on - strandat 4290.408 kb on + strandat 4290.446 kb on - strandat 4290.446 kb on - strandat 4290.448 kb on - strandat 4290.513 kb on - strandat 4290.698 kb on + strandat 4290.711 kb on - strandat 4290.721 kb on - strandat 4290.729 kb on + strandat 4290.743 kb on + strandat 4290.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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4,288,213 - BWI76_RS20480 0.76 +0.2
4,288,216 + BWI76_RS20480 0.76 -0.1
4,288,254 + BWI76_RS20480 0.80 +0.0
4,288,289 - BWI76_RS20480 0.84 -0.1
4,288,292 + BWI76_RS20480 0.85 +0.5
4,288,312 - BWI76_RS20480 0.87 -0.6
4,288,312 - BWI76_RS20480 0.87 +0.4
4,288,322 + BWI76_RS20480 0.88 -0.5
4,288,365 - +0.1
4,288,377 + -0.1
4,288,377 + +0.2
4,288,447 + -0.6
4,288,462 + -0.3
4,288,462 + +0.3
4,288,462 + +0.0
4,288,463 + +0.8
4,288,470 - +1.0
4,288,470 - -0.5
4,288,471 - -0.7
4,288,578 - -0.7
4,288,609 + -1.0
4,288,611 + +0.8
4,288,650 + -0.4
4,288,650 + +0.7
4,288,658 - -0.4
4,288,658 - +1.0
4,288,663 - +0.4
4,288,701 + -0.2
4,288,701 + +0.8
4,288,709 - -0.9
4,288,710 + +1.1
4,288,710 + -0.6
4,288,710 - -0.3
4,288,728 - -0.6
4,288,728 - +0.5
4,288,811 - +0.0
4,289,174 - BWI76_RS20490 0.15 -2.0
4,289,187 - +0.4
4,289,187 - BWI76_RS20490 0.16 -1.3
4,289,219 - BWI76_RS20490 0.20 +0.0
4,289,298 - BWI76_RS20490 0.31 -1.1
4,289,504 - BWI76_RS20490 0.57 -2.0
4,289,649 + BWI76_RS20490 0.76 -0.4
4,289,657 - BWI76_RS20490 0.77 +0.2
4,289,657 - BWI76_RS20490 0.77 -0.9
4,289,880 - +0.7
4,289,971 - -0.4
4,289,971 - -0.6
4,290,008 + +0.2
4,290,016 - +2.2
4,290,016 - -0.5
4,290,016 - +0.6
4,290,016 - -0.2
4,290,016 - +1.0
4,290,016 - -1.0
4,290,016 - -1.6
4,290,016 - -0.2
4,290,016 - -0.8
4,290,016 - +0.3
4,290,046 + +1.6
4,290,046 + +1.6
4,290,091 + +0.3
4,290,096 + +0.8
4,290,096 + -1.0
4,290,101 + -0.4
4,290,101 + +0.6
4,290,102 + -0.2
4,290,135 + -0.2
4,290,145 + +0.3
4,290,145 + +0.3
4,290,145 + +0.6
4,290,145 + -0.4
4,290,145 + -0.8
4,290,145 + -0.2
4,290,145 + +0.2
4,290,145 + -0.1
4,290,145 + -0.0
4,290,145 + -0.4
4,290,145 + -0.3
4,290,145 + +0.1
4,290,145 + -0.7
4,290,153 - -0.2
4,290,153 - -0.1
4,290,153 - -0.1
4,290,153 - -0.6
4,290,153 - -1.8
4,290,153 - +1.0
4,290,153 - +1.6
4,290,153 - +0.0
4,290,155 + -0.1
4,290,155 + -0.2
4,290,163 - +0.1
4,290,164 - +0.5
4,290,164 - -0.5
4,290,166 + +0.4
4,290,169 - +0.8
4,290,188 - -0.2
4,290,194 + -0.1
4,290,288 + +0.4
4,290,288 + +0.0
4,290,289 + -0.4
4,290,289 + -0.1
4,290,289 + -2.0
4,290,291 + +0.1
4,290,291 + -1.8
4,290,291 + +0.6
4,290,291 + -0.0
4,290,297 - -1.0
4,290,299 - -0.4
4,290,299 - +0.2
4,290,306 + +0.4
4,290,315 + +0.7
4,290,322 + +0.4
4,290,322 - -1.4
4,290,323 - -0.1
4,290,334 + -0.2
4,290,369 + -0.0
4,290,369 + +0.0
4,290,377 - +0.3
4,290,377 - +0.1
4,290,377 - +0.9
4,290,377 - -0.2
4,290,386 - +0.7
4,290,408 + +0.2
4,290,446 - +1.0
4,290,446 - -0.0
4,290,448 - -0.5
4,290,513 - +0.2
4,290,698 + +0.6
4,290,711 - -0.5
4,290,721 - -1.6
4,290,729 + -0.8
4,290,743 + +0.1
4,290,751 - -0.1

Or see this region's nucleotide sequence