Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17880 and BWI76_RS17885 are separated by 36 nucleotides BWI76_RS17885 and BWI76_RS17890 are separated by 446 nucleotides
BWI76_RS17880: BWI76_RS17880 - c-di-GMP phosphodiesterase, at 3,717,971 to 3,719,536
_RS17880
BWI76_RS17885: BWI76_RS17885 - hypothetical protein, at 3,719,573 to 3,721,132
_RS17885
BWI76_RS17890: BWI76_RS17890 - PTS mannose transporter subunit EIIAB, at 3,721,579 to 3,722,547
_RS17890
Position (kb)
3719
3720
3721
3722 Strain fitness (log2 ratio)
-1
0
1 at 3718.667 kb on - strand, within BWI76_RS17880 at 3718.890 kb on - strand, within BWI76_RS17880 at 3718.952 kb on - strand, within BWI76_RS17880 at 3719.698 kb on - strand at 3719.782 kb on + strand, within BWI76_RS17885 at 3719.966 kb on + strand, within BWI76_RS17885 at 3720.192 kb on - strand, within BWI76_RS17885 at 3720.228 kb on - strand, within BWI76_RS17885 at 3720.252 kb on - strand, within BWI76_RS17885 at 3720.345 kb on - strand, within BWI76_RS17885 at 3720.559 kb on + strand, within BWI76_RS17885 at 3720.615 kb on + strand, within BWI76_RS17885 at 3720.786 kb on + strand, within BWI76_RS17885 at 3721.179 kb on - strand at 3721.263 kb on + strand at 3721.276 kb on + strand at 3721.282 kb on + strand at 3721.375 kb on - strand at 3721.460 kb on - strand at 3721.487 kb on + strand at 3721.535 kb on + strand at 3721.543 kb on - strand at 3721.543 kb on - strand at 3721.571 kb on + strand at 3721.700 kb on + strand, within BWI76_RS17890 at 3721.880 kb on + strand, within BWI76_RS17890 at 3722.048 kb on + strand, within BWI76_RS17890
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 3,718,667 - BWI76_RS17880 0.44 +0.8 3,718,890 - BWI76_RS17880 0.59 -1.2 3,718,952 - BWI76_RS17880 0.63 +0.2 3,719,698 - -0.3 3,719,782 + BWI76_RS17885 0.13 +1.3 3,719,966 + BWI76_RS17885 0.25 +0.2 3,720,192 - BWI76_RS17885 0.40 +0.3 3,720,228 - BWI76_RS17885 0.42 +0.7 3,720,252 - BWI76_RS17885 0.44 -0.8 3,720,345 - BWI76_RS17885 0.49 +0.4 3,720,559 + BWI76_RS17885 0.63 +0.2 3,720,615 + BWI76_RS17885 0.67 +0.9 3,720,786 + BWI76_RS17885 0.78 +0.0 3,721,179 - +0.5 3,721,263 + -0.5 3,721,276 + +0.3 3,721,282 + +0.1 3,721,375 - +0.5 3,721,460 - +0.1 3,721,487 + -0.0 3,721,535 + +0.4 3,721,543 - -0.3 3,721,543 - -0.5 3,721,571 + +0.3 3,721,700 + BWI76_RS17890 0.12 -0.0 3,721,880 + BWI76_RS17890 0.31 +0.4 3,722,048 + BWI76_RS17890 0.48 -0.3
Or see this region's nucleotide sequence