Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16390 and BWI76_RS16395 are separated by 108 nucleotides BWI76_RS16395 and BWI76_RS16400 are separated by 47 nucleotides BWI76_RS16400 and BWI76_RS16405 are separated by 61 nucleotides
BWI76_RS16390: BWI76_RS16390 - dipeptide/tripeptide permease A, at 3,400,434 to 3,401,939
_RS16390
BWI76_RS16395: BWI76_RS16395 - glutathione S-transferase, at 3,402,048 to 3,402,653
_RS16395
BWI76_RS16400: BWI76_RS16400 - pyridoxal kinase, at 3,402,701 to 3,403,561
_RS16400
BWI76_RS16405: BWI76_RS16405 - tyrosine--tRNA ligase, at 3,403,623 to 3,404,897
_RS16405
Position (kb) 3402
3403 Strain fitness (log2 ratio) -2
-1
0
1 at 3401.195 kb on + strand, within BWI76_RS16390 at 3401.301 kb on + strand, within BWI76_RS16390 at 3401.391 kb on - strand, within BWI76_RS16390 at 3402.033 kb on + strand at 3402.111 kb on + strand, within BWI76_RS16395 at 3402.119 kb on - strand, within BWI76_RS16395 at 3402.407 kb on + strand, within BWI76_RS16395 at 3402.565 kb on - strand, within BWI76_RS16395 at 3402.727 kb on + strand at 3403.460 kb on - strand, within BWI76_RS16400 at 3403.528 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 3,401,195 + BWI76_RS16390 0.51 +0.0 3,401,301 + BWI76_RS16390 0.58 -1.8 3,401,391 - BWI76_RS16390 0.64 +0.1 3,402,033 + +0.1 3,402,111 + BWI76_RS16395 0.10 +0.2 3,402,119 - BWI76_RS16395 0.12 +0.7 3,402,407 + BWI76_RS16395 0.59 -0.0 3,402,565 - BWI76_RS16395 0.85 +0.8 3,402,727 + +0.4 3,403,460 - BWI76_RS16400 0.88 -0.3 3,403,528 - -0.2
Or see this region's nucleotide sequence