Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12215 and BWI76_RS12220 are separated by 389 nucleotides BWI76_RS12220 and BWI76_RS12225 are separated by 364 nucleotides BWI76_RS12225 and BWI76_RS12230 are separated by 481 nucleotides BWI76_RS12230 and BWI76_RS12235 are separated by 244 nucleotides
BWI76_RS12215: BWI76_RS12215 - HNH endonuclease, at 2,555,251 to 2,555,376
_RS12215
BWI76_RS12220: BWI76_RS12220 - hypothetical protein, at 2,555,766 to 2,556,005
_RS12220
BWI76_RS12225: BWI76_RS12225 - hypothetical protein, at 2,556,370 to 2,556,543
_RS12225
BWI76_RS12230: BWI76_RS12230 - hypothetical protein, at 2,557,025 to 2,557,270
_RS12230
BWI76_RS12235: BWI76_RS12235 - hypothetical protein, at 2,557,515 to 2,557,703
_RS12235
Position (kb)
2556
2557 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2555.372 kb on - strand at 2555.381 kb on + strand at 2555.387 kb on - strand at 2555.416 kb on - strand at 2555.421 kb on - strand at 2555.446 kb on - strand at 2555.470 kb on - strand at 2555.511 kb on - strand at 2555.548 kb on + strand at 2555.548 kb on + strand at 2555.554 kb on - strand at 2555.556 kb on - strand at 2555.561 kb on + strand at 2555.591 kb on + strand at 2555.612 kb on - strand at 2555.628 kb on + strand at 2555.641 kb on + strand at 2555.652 kb on + strand at 2555.694 kb on + strand at 2555.694 kb on + strand at 2555.797 kb on + strand, within BWI76_RS12220 at 2555.808 kb on - strand, within BWI76_RS12220 at 2555.814 kb on + strand, within BWI76_RS12220 at 2555.814 kb on + strand, within BWI76_RS12220 at 2555.817 kb on - strand, within BWI76_RS12220 at 2555.817 kb on - strand, within BWI76_RS12220 at 2555.819 kb on + strand, within BWI76_RS12220 at 2555.822 kb on - strand, within BWI76_RS12220 at 2555.840 kb on + strand, within BWI76_RS12220 at 2555.848 kb on - strand, within BWI76_RS12220 at 2555.848 kb on - strand, within BWI76_RS12220 at 2555.884 kb on + strand, within BWI76_RS12220 at 2555.884 kb on + strand, within BWI76_RS12220 at 2555.892 kb on - strand, within BWI76_RS12220 at 2555.892 kb on - strand, within BWI76_RS12220 at 2555.892 kb on - strand, within BWI76_RS12220 at 2555.908 kb on - strand, within BWI76_RS12220 at 2555.951 kb on + strand, within BWI76_RS12220 at 2555.951 kb on + strand, within BWI76_RS12220 at 2555.951 kb on + strand, within BWI76_RS12220 at 2555.951 kb on + strand, within BWI76_RS12220 at 2555.961 kb on - strand, within BWI76_RS12220 at 2556.091 kb on + strand at 2556.091 kb on + strand at 2556.091 kb on + strand at 2556.091 kb on + strand at 2556.091 kb on + strand at 2556.091 kb on + strand at 2556.099 kb on + strand at 2556.099 kb on - strand at 2556.100 kb on + strand at 2556.101 kb on + strand at 2556.101 kb on + strand at 2556.105 kb on + strand at 2556.114 kb on + strand at 2556.114 kb on + strand at 2556.114 kb on + strand at 2556.122 kb on - strand at 2556.137 kb on + strand at 2556.140 kb on - strand at 2556.191 kb on + strand at 2556.195 kb on + strand at 2556.240 kb on + strand at 2556.245 kb on + strand at 2556.250 kb on + strand at 2556.250 kb on + strand at 2556.250 kb on + strand at 2556.250 kb on + strand at 2556.250 kb on + strand at 2556.250 kb on + strand at 2556.250 kb on + strand at 2556.250 kb on + strand at 2556.250 kb on + strand at 2556.250 kb on + strand at 2556.258 kb on - strand at 2556.258 kb on - strand at 2556.258 kb on - strand at 2556.258 kb on - strand at 2556.258 kb on - strand at 2556.258 kb on - strand at 2556.258 kb on - strand at 2556.258 kb on - strand at 2556.260 kb on + strand at 2556.290 kb on - strand at 2556.299 kb on - strand at 2556.301 kb on + strand at 2556.301 kb on + strand at 2556.354 kb on + strand at 2556.354 kb on + strand at 2556.354 kb on + strand at 2556.354 kb on + strand at 2556.360 kb on - strand at 2556.360 kb on - strand at 2556.362 kb on - strand at 2556.362 kb on - strand at 2556.362 kb on - strand at 2556.362 kb on - strand at 2556.362 kb on - strand at 2556.362 kb on - strand at 2556.362 kb on - strand at 2556.362 kb on - strand at 2556.506 kb on + strand, within BWI76_RS12225 at 2556.506 kb on + strand, within BWI76_RS12225 at 2556.576 kb on + strand at 2556.576 kb on + strand at 2556.579 kb on + strand at 2556.579 kb on + strand at 2556.589 kb on + strand at 2556.589 kb on + strand at 2556.591 kb on - strand at 2556.591 kb on - strand at 2556.592 kb on - strand at 2556.592 kb on - strand at 2556.601 kb on - strand at 2556.621 kb on - strand at 2556.636 kb on + strand at 2556.636 kb on + strand at 2556.658 kb on - strand at 2556.662 kb on + strand at 2556.663 kb on - strand at 2556.686 kb on - strand at 2556.767 kb on + strand at 2556.806 kb on + strand at 2556.808 kb on + strand at 2556.808 kb on + strand at 2556.808 kb on + strand at 2556.808 kb on + strand at 2556.816 kb on - strand at 2556.816 kb on - strand at 2556.840 kb on + strand at 2556.841 kb on + strand at 2556.842 kb on + strand at 2556.843 kb on + strand at 2556.843 kb on - strand at 2556.848 kb on - strand at 2556.867 kb on - strand at 2556.867 kb on - strand at 2556.868 kb on - strand at 2556.870 kb on + strand at 2556.870 kb on + strand at 2556.870 kb on + strand at 2556.870 kb on + strand at 2556.870 kb on + strand at 2556.870 kb on + strand at 2556.878 kb on - strand at 2556.878 kb on - strand at 2556.878 kb on - strand at 2556.878 kb on - strand at 2556.878 kb on - strand at 2556.879 kb on - strand at 2556.886 kb on - strand at 2556.889 kb on - strand at 2556.900 kb on - strand at 2556.907 kb on + strand at 2557.064 kb on - strand, within BWI76_RS12230 at 2557.081 kb on + strand, within BWI76_RS12230 at 2557.118 kb on + strand, within BWI76_RS12230 at 2557.118 kb on + strand, within BWI76_RS12230 at 2557.123 kb on + strand, within BWI76_RS12230 at 2557.126 kb on - strand, within BWI76_RS12230 at 2557.126 kb on - strand, within BWI76_RS12230 at 2557.208 kb on - strand, within BWI76_RS12230 at 2557.211 kb on + strand, within BWI76_RS12230 at 2557.216 kb on + strand, within BWI76_RS12230 at 2557.219 kb on - strand, within BWI76_RS12230 at 2557.219 kb on - strand, within BWI76_RS12230 at 2557.236 kb on - strand, within BWI76_RS12230 at 2557.248 kb on - strand at 2557.256 kb on + strand at 2557.256 kb on + strand at 2557.256 kb on + strand at 2557.291 kb on - strand at 2557.331 kb on + strand at 2557.331 kb on + strand at 2557.331 kb on + strand at 2557.339 kb on - strand at 2557.346 kb on + strand at 2557.346 kb on + strand at 2557.346 kb on + strand at 2557.346 kb on + strand at 2557.354 kb on - strand at 2557.354 kb on - strand at 2557.354 kb on - strand at 2557.436 kb on + strand at 2557.454 kb on + strand at 2557.454 kb on + strand at 2557.462 kb on - strand at 2557.462 kb on - strand at 2557.462 kb on - strand at 2557.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 2,555,372 - -1.9 2,555,381 + +0.9 2,555,387 - -0.2 2,555,416 - +0.0 2,555,421 - +0.3 2,555,446 - -0.1 2,555,470 - +0.1 2,555,511 - -0.6 2,555,548 + -0.4 2,555,548 + -0.3 2,555,554 - -0.6 2,555,556 - +0.2 2,555,561 + -0.2 2,555,591 + +2.5 2,555,612 - -0.4 2,555,628 + -0.7 2,555,641 + -1.2 2,555,652 + -0.1 2,555,694 + -1.5 2,555,694 + -1.0 2,555,797 + BWI76_RS12220 0.13 +0.2 2,555,808 - BWI76_RS12220 0.17 -2.1 2,555,814 + BWI76_RS12220 0.20 +0.2 2,555,814 + BWI76_RS12220 0.20 +0.9 2,555,817 - BWI76_RS12220 0.21 -0.7 2,555,817 - BWI76_RS12220 0.21 -0.6 2,555,819 + BWI76_RS12220 0.22 -0.3 2,555,822 - BWI76_RS12220 0.23 +0.1 2,555,840 + BWI76_RS12220 0.31 +0.4 2,555,848 - BWI76_RS12220 0.34 +0.2 2,555,848 - BWI76_RS12220 0.34 -1.3 2,555,884 + BWI76_RS12220 0.49 +0.1 2,555,884 + BWI76_RS12220 0.49 +0.9 2,555,892 - BWI76_RS12220 0.53 -0.3 2,555,892 - BWI76_RS12220 0.53 +0.7 2,555,892 - BWI76_RS12220 0.53 +1.2 2,555,908 - BWI76_RS12220 0.59 +1.1 2,555,951 + BWI76_RS12220 0.77 +0.3 2,555,951 + BWI76_RS12220 0.77 -0.2 2,555,951 + BWI76_RS12220 0.77 -0.2 2,555,951 + BWI76_RS12220 0.77 -0.4 2,555,961 - BWI76_RS12220 0.81 +0.6 2,556,091 + -0.7 2,556,091 + -0.2 2,556,091 + +0.1 2,556,091 + -0.9 2,556,091 + -0.7 2,556,091 + +0.1 2,556,099 + +0.4 2,556,099 - +2.4 2,556,100 + +0.2 2,556,101 + -0.1 2,556,101 + -0.4 2,556,105 + +0.2 2,556,114 + -1.1 2,556,114 + -0.2 2,556,114 + -1.4 2,556,122 - -1.1 2,556,137 + +0.9 2,556,140 - -0.1 2,556,191 + +0.6 2,556,195 + -0.5 2,556,240 + +0.3 2,556,245 + -0.3 2,556,250 + -0.5 2,556,250 + -0.9 2,556,250 + +0.7 2,556,250 + +0.1 2,556,250 + -0.3 2,556,250 + +0.5 2,556,250 + +0.4 2,556,250 + -0.5 2,556,250 + +0.0 2,556,250 + -1.0 2,556,258 - +0.8 2,556,258 - -0.7 2,556,258 - +1.9 2,556,258 - +1.2 2,556,258 - -0.8 2,556,258 - -1.3 2,556,258 - +0.5 2,556,258 - +1.5 2,556,260 + -0.3 2,556,290 - -0.1 2,556,299 - +1.0 2,556,301 + +0.2 2,556,301 + -0.5 2,556,354 + +0.1 2,556,354 + +0.1 2,556,354 + -0.2 2,556,354 + -0.3 2,556,360 - -1.5 2,556,360 - -1.2 2,556,362 - -0.3 2,556,362 - -0.7 2,556,362 - -0.6 2,556,362 - -0.2 2,556,362 - -0.4 2,556,362 - +0.8 2,556,362 - -0.5 2,556,362 - +0.1 2,556,506 + BWI76_RS12225 0.78 -1.2 2,556,506 + BWI76_RS12225 0.78 -0.8 2,556,576 + +1.1 2,556,576 + -0.1 2,556,579 + +1.6 2,556,579 + +1.2 2,556,589 + -1.0 2,556,589 + -0.1 2,556,591 - +0.3 2,556,591 - -0.6 2,556,592 - -0.7 2,556,592 - -0.1 2,556,601 - -0.5 2,556,621 - +0.3 2,556,636 + +0.1 2,556,636 + +0.2 2,556,658 - -0.3 2,556,662 + -0.1 2,556,663 - -0.6 2,556,686 - -0.7 2,556,767 + +0.8 2,556,806 + +0.7 2,556,808 + +2.7 2,556,808 + +0.5 2,556,808 + -0.1 2,556,808 + +0.3 2,556,816 - +0.4 2,556,816 - +0.7 2,556,840 + +0.7 2,556,841 + -0.7 2,556,842 + -0.3 2,556,843 + -0.6 2,556,843 - -0.6 2,556,848 - -0.3 2,556,867 - +0.7 2,556,867 - +0.2 2,556,868 - +0.8 2,556,870 + +0.2 2,556,870 + -0.7 2,556,870 + +1.3 2,556,870 + +0.5 2,556,870 + -0.1 2,556,870 + -0.4 2,556,878 - +0.2 2,556,878 - -0.3 2,556,878 - +0.9 2,556,878 - +0.4 2,556,878 - -0.5 2,556,879 - -0.0 2,556,886 - -0.0 2,556,889 - +0.1 2,556,900 - +0.4 2,556,907 + +0.4 2,557,064 - BWI76_RS12230 0.16 -0.3 2,557,081 + BWI76_RS12230 0.23 +0.4 2,557,118 + BWI76_RS12230 0.38 +0.2 2,557,118 + BWI76_RS12230 0.38 +0.1 2,557,123 + BWI76_RS12230 0.40 -0.3 2,557,126 - BWI76_RS12230 0.41 -1.4 2,557,126 - BWI76_RS12230 0.41 +1.1 2,557,208 - BWI76_RS12230 0.74 -0.2 2,557,211 + BWI76_RS12230 0.76 +0.7 2,557,216 + BWI76_RS12230 0.78 +0.9 2,557,219 - BWI76_RS12230 0.79 -2.1 2,557,219 - BWI76_RS12230 0.79 -0.8 2,557,236 - BWI76_RS12230 0.86 +0.3 2,557,248 - +1.2 2,557,256 + -0.4 2,557,256 + +0.7 2,557,256 + +0.8 2,557,291 - +1.6 2,557,331 + +0.1 2,557,331 + -0.1 2,557,331 + -1.1 2,557,339 - +0.6 2,557,346 + +0.8 2,557,346 + -0.2 2,557,346 + -0.5 2,557,346 + -0.4 2,557,354 - -1.3 2,557,354 - +0.9 2,557,354 - +0.4 2,557,436 + +1.1 2,557,454 + +0.2 2,557,454 + +0.0 2,557,462 - -0.4 2,557,462 - -0.2 2,557,462 - +0.2 2,557,504 + +0.0
Or see this region's nucleotide sequence