Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11505 and BWI76_RS11510 overlap by 47 nucleotides BWI76_RS11510 and BWI76_RS11515 are separated by 188 nucleotides BWI76_RS11515 and BWI76_RS11520 are separated by 42 nucleotides BWI76_RS11520 and BWI76_RS11525 are separated by 60 nucleotides BWI76_RS11525 and BWI76_RS11530 are separated by 100 nucleotides
BWI76_RS11505: BWI76_RS11505 - aldehyde dehydrogenase, at 2,422,483 to 2,423,478
_RS11505
BWI76_RS11510: BWI76_RS11510 - hypothetical protein, at 2,423,432 to 2,423,628
_RS11510
BWI76_RS11515: BWI76_RS11515 - peptide-methionine (R)-S-oxide reductase, at 2,423,817 to 2,424,230
_RS11515
BWI76_RS11520: BWI76_RS11520 - hypothetical protein, at 2,424,273 to 2,424,548
_RS11520
BWI76_RS11525: BWI76_RS11525 - HNH endonuclease, at 2,424,609 to 2,424,953
_RS11525
BWI76_RS11530: BWI76_RS11530 - chitinase, at 2,425,054 to 2,426,307
_RS11530
Position (kb)
2424
2425 Strain fitness (log2 ratio)
-1
0
1 at 2423.731 kb on + strand at 2423.841 kb on - strand at 2423.870 kb on + strand, within BWI76_RS11515 at 2423.901 kb on - strand, within BWI76_RS11515 at 2424.443 kb on + strand, within BWI76_RS11520 at 2424.573 kb on + strand at 2424.759 kb on + strand, within BWI76_RS11525 at 2424.772 kb on - strand, within BWI76_RS11525 at 2425.060 kb on - strand at 2425.203 kb on + strand, within BWI76_RS11530
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 2,423,731 + +0.0 2,423,841 - -0.5 2,423,870 + BWI76_RS11515 0.13 -1.0 2,423,901 - BWI76_RS11515 0.20 -0.0 2,424,443 + BWI76_RS11520 0.62 -0.9 2,424,573 + +0.1 2,424,759 + BWI76_RS11525 0.43 +0.2 2,424,772 - BWI76_RS11525 0.47 +0.7 2,425,060 - +0.6 2,425,203 + BWI76_RS11530 0.12 +0.2
Or see this region's nucleotide sequence