Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09640

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09635 and BWI76_RS09640 are separated by 0 nucleotidesBWI76_RS09640 and BWI76_RS09645 are separated by 114 nucleotides BWI76_RS09635: BWI76_RS09635 - amino acid ABC transporter ATP-binding protein, at 2,015,173 to 2,016,894 _RS09635 BWI76_RS09640: BWI76_RS09640 - cysteine/glutathione ABC transporter permease/ATP-binding protein CydD, at 2,016,895 to 2,018,661 _RS09640 BWI76_RS09645: BWI76_RS09645 - thioredoxin-disulfide reductase, at 2,018,776 to 2,019,744 _RS09645 Position (kb) 2016 2017 2018 2019Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2016.197 kb on - strand, within BWI76_RS09635at 2016.501 kb on + strand, within BWI76_RS09635at 2016.577 kb on - strand, within BWI76_RS09635at 2017.001 kb on - strandat 2017.007 kb on + strandat 2017.216 kb on - strand, within BWI76_RS09640at 2017.319 kb on + strand, within BWI76_RS09640at 2017.355 kb on - strand, within BWI76_RS09640at 2017.392 kb on - strand, within BWI76_RS09640at 2017.817 kb on - strand, within BWI76_RS09640at 2018.358 kb on - strand, within BWI76_RS09640at 2018.799 kb on + strandat 2019.640 kb on + strand, within BWI76_RS09645

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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2,016,197 - BWI76_RS09635 0.59 -0.4
2,016,501 + BWI76_RS09635 0.77 -0.7
2,016,577 - BWI76_RS09635 0.82 -1.7
2,017,001 - -2.1
2,017,007 + -1.0
2,017,216 - BWI76_RS09640 0.18 -1.2
2,017,319 + BWI76_RS09640 0.24 -1.6
2,017,355 - BWI76_RS09640 0.26 -0.9
2,017,392 - BWI76_RS09640 0.28 -1.7
2,017,817 - BWI76_RS09640 0.52 -0.3
2,018,358 - BWI76_RS09640 0.83 -1.5
2,018,799 + -0.7
2,019,640 + BWI76_RS09645 0.89 -4.1

Or see this region's nucleotide sequence