Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08375 and BWI76_RS08380 are separated by 15 nucleotides BWI76_RS08380 and BWI76_RS08385 are separated by 45 nucleotides BWI76_RS08385 and BWI76_RS08390 are separated by 437 nucleotides BWI76_RS08390 and BWI76_RS08395 overlap by 17 nucleotides
BWI76_RS08375: BWI76_RS08375 - pyroglutamyl-peptidase I, at 1,772,181 to 1,772,825
_RS08375
BWI76_RS08380: BWI76_RS08380 - endonuclease VIII, at 1,772,841 to 1,773,632
_RS08380
BWI76_RS08385: BWI76_RS08385 - citrate (Si)-synthase, at 1,773,678 to 1,774,961
_RS08385
BWI76_RS08390: BWI76_RS08390 - hypothetical protein, at 1,775,399 to 1,775,617
_RS08390
BWI76_RS08395: BWI76_RS08395 - succinate dehydrogenase cytochrome b556 large subunit, at 1,775,601 to 1,776,005
_RS08395
Position (kb) 1773
1774
1775 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1772.904 kb on + strand at 1772.912 kb on - strand at 1773.069 kb on + strand, within BWI76_RS08380 at 1773.220 kb on + strand, within BWI76_RS08380 at 1773.794 kb on + strand at 1773.862 kb on - strand, within BWI76_RS08385 at 1774.346 kb on + strand, within BWI76_RS08385 at 1774.604 kb on - strand, within BWI76_RS08385 at 1775.091 kb on + strand at 1775.099 kb on - strand at 1775.114 kb on + strand at 1775.183 kb on + strand at 1775.196 kb on - strand at 1775.207 kb on + strand at 1775.215 kb on + strand at 1775.450 kb on + strand, within BWI76_RS08390 at 1775.461 kb on - strand, within BWI76_RS08390 at 1775.658 kb on - strand at 1775.929 kb on - strand, within BWI76_RS08395
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 1,772,904 + +0.5 1,772,912 - +0.0 1,773,069 + BWI76_RS08380 0.29 +1.4 1,773,220 + BWI76_RS08380 0.48 -0.3 1,773,794 + -1.3 1,773,862 - BWI76_RS08385 0.14 -2.0 1,774,346 + BWI76_RS08385 0.52 -4.2 1,774,604 - BWI76_RS08385 0.72 -1.3 1,775,091 + -0.6 1,775,099 - -1.3 1,775,114 + -4.3 1,775,183 + -2.7 1,775,196 - +0.2 1,775,207 + -1.0 1,775,215 + -1.5 1,775,450 + BWI76_RS08390 0.23 +0.2 1,775,461 - BWI76_RS08390 0.28 -1.0 1,775,658 - -1.0 1,775,929 - BWI76_RS08395 0.81 -1.0
Or see this region's nucleotide sequence