Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06235

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06230 and BWI76_RS06235 are separated by 21 nucleotidesBWI76_RS06235 and BWI76_RS06240 are separated by 418 nucleotides BWI76_RS06230: BWI76_RS06230 - DNA-binding response regulator, at 1,307,743 to 1,308,432 _RS06230 BWI76_RS06235: BWI76_RS06235 - PAS domain-containing sensor histidine kinase, at 1,308,454 to 1,309,743 _RS06235 BWI76_RS06240: BWI76_RS06240 - branched-chain amino acid transport system 2 carrier protein BrnQ, at 1,310,162 to 1,311,481 _RS06240 Position (kb) 1308 1309 1310Strain fitness (log2 ratio) -1 0 1 2at 1307.514 kb on - strandat 1307.514 kb on - strandat 1307.530 kb on + strandat 1307.540 kb on - strandat 1307.567 kb on + strandat 1307.575 kb on - strandat 1307.707 kb on + strandat 1307.707 kb on + strandat 1307.707 kb on + strandat 1307.855 kb on + strand, within BWI76_RS06230at 1307.865 kb on + strand, within BWI76_RS06230at 1307.933 kb on + strand, within BWI76_RS06230at 1308.435 kb on + strandat 1308.444 kb on + strandat 1308.454 kb on + strandat 1308.850 kb on - strand, within BWI76_RS06235at 1309.114 kb on + strand, within BWI76_RS06235at 1309.256 kb on - strand, within BWI76_RS06235at 1309.312 kb on + strand, within BWI76_RS06235at 1309.374 kb on - strand, within BWI76_RS06235at 1309.654 kb on + strandat 1309.657 kb on - strandat 1309.699 kb on + strandat 1309.814 kb on + strandat 1309.961 kb on + strandat 1310.003 kb on - strandat 1310.122 kb on - strandat 1310.139 kb on + strandat 1310.203 kb on + strandat 1310.211 kb on + strandat 1310.281 kb on + strandat 1310.281 kb on + strandat 1310.350 kb on + strand, within BWI76_RS06240at 1310.538 kb on - strand, within BWI76_RS06240

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,307,514 - +0.5
1,307,514 - -0.7
1,307,530 + -0.3
1,307,540 - -0.1
1,307,567 + +0.1
1,307,575 - -0.1
1,307,707 + +0.8
1,307,707 + -0.3
1,307,707 + +0.1
1,307,855 + BWI76_RS06230 0.16 +2.1
1,307,865 + BWI76_RS06230 0.18 +0.2
1,307,933 + BWI76_RS06230 0.28 +0.5
1,308,435 + +0.6
1,308,444 + -0.1
1,308,454 + -0.5
1,308,850 - BWI76_RS06235 0.31 +0.1
1,309,114 + BWI76_RS06235 0.51 +0.2
1,309,256 - BWI76_RS06235 0.62 +0.6
1,309,312 + BWI76_RS06235 0.67 -0.4
1,309,374 - BWI76_RS06235 0.71 -0.9
1,309,654 + -1.3
1,309,657 - -0.4
1,309,699 + -0.3
1,309,814 + +0.3
1,309,961 + -0.5
1,310,003 - +0.3
1,310,122 - +0.0
1,310,139 + -1.1
1,310,203 + +0.6
1,310,211 + +0.5
1,310,281 + -0.4
1,310,281 + +1.5
1,310,350 + BWI76_RS06240 0.14 -0.2
1,310,538 - BWI76_RS06240 0.28 -0.9

Or see this region's nucleotide sequence