Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06230

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06225 and BWI76_RS06230 are separated by 294 nucleotidesBWI76_RS06230 and BWI76_RS06235 are separated by 21 nucleotides BWI76_RS06225: BWI76_RS06225 - exonuclease sbcCD subunit D, at 1,306,246 to 1,307,448 _RS06225 BWI76_RS06230: BWI76_RS06230 - DNA-binding response regulator, at 1,307,743 to 1,308,432 _RS06230 BWI76_RS06235: BWI76_RS06235 - PAS domain-containing sensor histidine kinase, at 1,308,454 to 1,309,743 _RS06235 Position (kb) 1307 1308 1309Strain fitness (log2 ratio) -1 0 1 2at 1306.854 kb on - strand, within BWI76_RS06225at 1306.946 kb on - strand, within BWI76_RS06225at 1307.040 kb on - strand, within BWI76_RS06225at 1307.278 kb on + strand, within BWI76_RS06225at 1307.278 kb on + strand, within BWI76_RS06225at 1307.431 kb on + strandat 1307.432 kb on - strandat 1307.514 kb on - strandat 1307.514 kb on - strandat 1307.530 kb on + strandat 1307.540 kb on - strandat 1307.567 kb on + strandat 1307.575 kb on - strandat 1307.707 kb on + strandat 1307.707 kb on + strandat 1307.707 kb on + strandat 1307.855 kb on + strand, within BWI76_RS06230at 1307.865 kb on + strand, within BWI76_RS06230at 1307.933 kb on + strand, within BWI76_RS06230at 1308.435 kb on + strandat 1308.444 kb on + strandat 1308.454 kb on + strandat 1308.850 kb on - strand, within BWI76_RS06235at 1309.114 kb on + strand, within BWI76_RS06235at 1309.256 kb on - strand, within BWI76_RS06235at 1309.312 kb on + strand, within BWI76_RS06235at 1309.374 kb on - strand, within BWI76_RS06235

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,306,854 - BWI76_RS06225 0.51 -0.9
1,306,946 - BWI76_RS06225 0.58 +0.3
1,307,040 - BWI76_RS06225 0.66 -0.1
1,307,278 + BWI76_RS06225 0.86 -0.3
1,307,278 + BWI76_RS06225 0.86 +0.5
1,307,431 + +0.2
1,307,432 - -0.9
1,307,514 - +0.5
1,307,514 - -0.7
1,307,530 + -0.3
1,307,540 - -0.1
1,307,567 + +0.1
1,307,575 - -0.1
1,307,707 + +0.8
1,307,707 + -0.3
1,307,707 + +0.1
1,307,855 + BWI76_RS06230 0.16 +2.1
1,307,865 + BWI76_RS06230 0.18 +0.2
1,307,933 + BWI76_RS06230 0.28 +0.5
1,308,435 + +0.6
1,308,444 + -0.1
1,308,454 + -0.5
1,308,850 - BWI76_RS06235 0.31 +0.1
1,309,114 + BWI76_RS06235 0.51 +0.2
1,309,256 - BWI76_RS06235 0.62 +0.6
1,309,312 + BWI76_RS06235 0.67 -0.4
1,309,374 - BWI76_RS06235 0.71 -0.9

Or see this region's nucleotide sequence