Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05955

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05945 and BWI76_RS05950 overlap by 11 nucleotidesBWI76_RS05950 and BWI76_RS05955 overlap by 4 nucleotidesBWI76_RS05955 and BWI76_RS05960 are separated by 13 nucleotidesBWI76_RS05960 and BWI76_RS05965 overlap by 75 nucleotides BWI76_RS05945: BWI76_RS05945 - amino acid ABC transporter permease, at 1,250,368 to 1,251,051 _RS05945 BWI76_RS05950: BWI76_RS05950 - polar amino acid ABC transporter inner membrane subunit, at 1,251,041 to 1,251,793 _RS05950 BWI76_RS05955: BWI76_RS05955 - ABC transporter, at 1,251,790 to 1,252,608 _RS05955 BWI76_RS05960: BWI76_RS05960 - cysteine transport system periplasmic binding protein, at 1,252,622 to 1,253,431 _RS05960 BWI76_RS05965: BWI76_RS05965 - hypothetical protein, at 1,253,357 to 1,253,674 _RS05965 Position (kb) 1251 1252 1253Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1250.929 kb on - strand, within BWI76_RS05945at 1251.378 kb on - strand, within BWI76_RS05950at 1252.054 kb on - strand, within BWI76_RS05955at 1252.243 kb on + strand, within BWI76_RS05955at 1252.419 kb on - strand, within BWI76_RS05955at 1252.780 kb on + strand, within BWI76_RS05960at 1252.804 kb on + strand, within BWI76_RS05960at 1252.812 kb on - strand, within BWI76_RS05960at 1252.871 kb on + strand, within BWI76_RS05960at 1252.871 kb on + strand, within BWI76_RS05960at 1252.879 kb on - strand, within BWI76_RS05960at 1252.904 kb on - strand, within BWI76_RS05960at 1253.034 kb on - strand, within BWI76_RS05960at 1253.154 kb on - strand, within BWI76_RS05960at 1253.193 kb on + strand, within BWI76_RS05960at 1253.211 kb on - strand, within BWI76_RS05960at 1253.254 kb on - strand, within BWI76_RS05960at 1253.284 kb on + strand, within BWI76_RS05960at 1253.364 kb on + strandat 1253.364 kb on + strandat 1253.372 kb on - strandat 1253.372 kb on - strandat 1253.372 kb on - strandat 1253.372 kb on - strandat 1253.604 kb on - strand, within BWI76_RS05965at 1253.606 kb on - strand, within BWI76_RS05965

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,250,929 - BWI76_RS05945 0.82 -0.9
1,251,378 - BWI76_RS05950 0.45 +0.1
1,252,054 - BWI76_RS05955 0.32 -0.9
1,252,243 + BWI76_RS05955 0.55 +0.1
1,252,419 - BWI76_RS05955 0.77 -0.6
1,252,780 + BWI76_RS05960 0.20 +0.3
1,252,804 + BWI76_RS05960 0.22 +0.5
1,252,812 - BWI76_RS05960 0.23 -0.0
1,252,871 + BWI76_RS05960 0.31 -1.1
1,252,871 + BWI76_RS05960 0.31 +0.5
1,252,879 - BWI76_RS05960 0.32 -0.2
1,252,904 - BWI76_RS05960 0.35 -2.1
1,253,034 - BWI76_RS05960 0.51 +0.5
1,253,154 - BWI76_RS05960 0.66 -0.3
1,253,193 + BWI76_RS05960 0.70 -0.6
1,253,211 - BWI76_RS05960 0.73 -0.0
1,253,254 - BWI76_RS05960 0.78 -0.5
1,253,284 + BWI76_RS05960 0.82 +0.7
1,253,364 + +0.5
1,253,364 + +1.1
1,253,372 - -0.5
1,253,372 - -0.4
1,253,372 - -0.6
1,253,372 - +2.8
1,253,604 - BWI76_RS05965 0.78 +0.3
1,253,606 - BWI76_RS05965 0.78 -0.8

Or see this region's nucleotide sequence