Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05945 and BWI76_RS05950 overlap by 11 nucleotides BWI76_RS05950 and BWI76_RS05955 overlap by 4 nucleotides BWI76_RS05955 and BWI76_RS05960 are separated by 13 nucleotides BWI76_RS05960 and BWI76_RS05965 overlap by 75 nucleotides
BWI76_RS05945: BWI76_RS05945 - amino acid ABC transporter permease, at 1,250,368 to 1,251,051
_RS05945
BWI76_RS05950: BWI76_RS05950 - polar amino acid ABC transporter inner membrane subunit, at 1,251,041 to 1,251,793
_RS05950
BWI76_RS05955: BWI76_RS05955 - ABC transporter, at 1,251,790 to 1,252,608
_RS05955
BWI76_RS05960: BWI76_RS05960 - cysteine transport system periplasmic binding protein, at 1,252,622 to 1,253,431
_RS05960
BWI76_RS05965: BWI76_RS05965 - hypothetical protein, at 1,253,357 to 1,253,674
_RS05965
Position (kb)
1251
1252
1253 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1250.929 kb on - strand, within BWI76_RS05945 at 1251.378 kb on - strand, within BWI76_RS05950 at 1252.054 kb on - strand, within BWI76_RS05955 at 1252.243 kb on + strand, within BWI76_RS05955 at 1252.419 kb on - strand, within BWI76_RS05955 at 1252.780 kb on + strand, within BWI76_RS05960 at 1252.804 kb on + strand, within BWI76_RS05960 at 1252.812 kb on - strand, within BWI76_RS05960 at 1252.871 kb on + strand, within BWI76_RS05960 at 1252.871 kb on + strand, within BWI76_RS05960 at 1252.879 kb on - strand, within BWI76_RS05960 at 1252.904 kb on - strand, within BWI76_RS05960 at 1253.034 kb on - strand, within BWI76_RS05960 at 1253.154 kb on - strand, within BWI76_RS05960 at 1253.193 kb on + strand, within BWI76_RS05960 at 1253.211 kb on - strand, within BWI76_RS05960 at 1253.254 kb on - strand, within BWI76_RS05960 at 1253.284 kb on + strand, within BWI76_RS05960 at 1253.364 kb on + strand at 1253.364 kb on + strand at 1253.372 kb on - strand at 1253.372 kb on - strand at 1253.372 kb on - strand at 1253.372 kb on - strand at 1253.604 kb on - strand, within BWI76_RS05965 at 1253.606 kb on - strand, within BWI76_RS05965
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 1,250,929 - BWI76_RS05945 0.82 -0.9 1,251,378 - BWI76_RS05950 0.45 +0.1 1,252,054 - BWI76_RS05955 0.32 -0.9 1,252,243 + BWI76_RS05955 0.55 +0.1 1,252,419 - BWI76_RS05955 0.77 -0.6 1,252,780 + BWI76_RS05960 0.20 +0.3 1,252,804 + BWI76_RS05960 0.22 +0.5 1,252,812 - BWI76_RS05960 0.23 -0.0 1,252,871 + BWI76_RS05960 0.31 -1.1 1,252,871 + BWI76_RS05960 0.31 +0.5 1,252,879 - BWI76_RS05960 0.32 -0.2 1,252,904 - BWI76_RS05960 0.35 -2.1 1,253,034 - BWI76_RS05960 0.51 +0.5 1,253,154 - BWI76_RS05960 0.66 -0.3 1,253,193 + BWI76_RS05960 0.70 -0.6 1,253,211 - BWI76_RS05960 0.73 -0.0 1,253,254 - BWI76_RS05960 0.78 -0.5 1,253,284 + BWI76_RS05960 0.82 +0.7 1,253,364 + +0.5 1,253,364 + +1.1 1,253,372 - -0.5 1,253,372 - -0.4 1,253,372 - -0.6 1,253,372 - +2.8 1,253,604 - BWI76_RS05965 0.78 +0.3 1,253,606 - BWI76_RS05965 0.78 -0.8
Or see this region's nucleotide sequence