Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01385

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01375 and BWI76_RS01380 overlap by 1 nucleotidesBWI76_RS01380 and BWI76_RS01385 are separated by 41 nucleotidesBWI76_RS01385 and BWI76_RS01390 are separated by 11 nucleotidesBWI76_RS01390 and BWI76_RS01395 are separated by 387 nucleotides BWI76_RS01375: BWI76_RS01375 - Xaa-Pro dipeptidase, at 281,018 to 282,349 _RS01375 BWI76_RS01380: BWI76_RS01380 - YigZ family protein, at 282,349 to 282,963 _RS01380 BWI76_RS01385: BWI76_RS01385 - potassium transporter, at 283,005 to 284,456 _RS01385 BWI76_RS01390: BWI76_RS01390 - protoporphyrinogen oxidase, at 284,468 to 285,001 _RS01390 BWI76_RS01395: BWI76_RS01395 - 16S ribosomal RNA, at 285,389 to 286,942 _RS01395 Position (kb) 283 284 285Strain fitness (log2 ratio) -2 -1 0 1at 282.032 kb on - strand, within BWI76_RS01375at 282.032 kb on - strand, within BWI76_RS01375at 282.076 kb on + strand, within BWI76_RS01375at 282.095 kb on - strand, within BWI76_RS01375at 282.095 kb on - strand, within BWI76_RS01375at 282.099 kb on - strand, within BWI76_RS01375at 282.100 kb on - strand, within BWI76_RS01375at 282.220 kb on + strandat 282.230 kb on + strandat 282.479 kb on - strand, within BWI76_RS01380at 282.591 kb on + strand, within BWI76_RS01380at 282.719 kb on + strand, within BWI76_RS01380at 282.720 kb on - strand, within BWI76_RS01380at 283.237 kb on - strand, within BWI76_RS01385at 283.264 kb on + strand, within BWI76_RS01385at 283.908 kb on - strand, within BWI76_RS01385at 283.931 kb on + strand, within BWI76_RS01385at 284.107 kb on - strand, within BWI76_RS01385at 284.314 kb on + strandat 284.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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282,032 - BWI76_RS01375 0.76 +0.7
282,032 - BWI76_RS01375 0.76 +0.4
282,076 + BWI76_RS01375 0.79 -0.1
282,095 - BWI76_RS01375 0.81 +0.0
282,095 - BWI76_RS01375 0.81 -0.1
282,099 - BWI76_RS01375 0.81 +0.6
282,100 - BWI76_RS01375 0.81 +0.1
282,220 + +1.7
282,230 + +1.1
282,479 - BWI76_RS01380 0.21 +0.1
282,591 + BWI76_RS01380 0.39 -0.1
282,719 + BWI76_RS01380 0.60 -0.3
282,720 - BWI76_RS01380 0.60 +0.6
283,237 - BWI76_RS01385 0.16 +0.1
283,264 + BWI76_RS01385 0.18 -1.5
283,908 - BWI76_RS01385 0.62 -0.9
283,931 + BWI76_RS01385 0.64 -1.7
284,107 - BWI76_RS01385 0.76 -2.2
284,314 + -2.6
284,460 - -0.1

Or see this region's nucleotide sequence