Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01350

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01345 and BWI76_RS01350 are separated by 54 nucleotidesBWI76_RS01350 and BWI76_RS01355 are separated by 44 nucleotidesBWI76_RS01355 and BWI76_RS01360 are separated by 126 nucleotides BWI76_RS01345: BWI76_RS01345 - 3-octaprenyl-4-hydroxybenzoate decarboxylase, at 274,756 to 276,225 _RS01345 BWI76_RS01350: BWI76_RS01350 - NAD(P)H-flavin reductase, at 276,280 to 276,981 _RS01350 BWI76_RS01355: BWI76_RS01355 - hypothetical protein, at 277,026 to 277,337 _RS01355 BWI76_RS01360: BWI76_RS01360 - acetyl-CoA C-acyltransferase FadA, at 277,464 to 278,627 _RS01360 Position (kb) 276 277Strain fitness (log2 ratio) -1 0 1 2at 276.235 kb on + strandat 276.235 kb on + strandat 276.262 kb on + strandat 276.308 kb on + strandat 276.740 kb on + strand, within BWI76_RS01350at 277.128 kb on - strand, within BWI76_RS01355at 277.128 kb on - strand, within BWI76_RS01355at 277.174 kb on + strand, within BWI76_RS01355at 277.174 kb on + strand, within BWI76_RS01355at 277.182 kb on - strand, within BWI76_RS01355at 277.213 kb on + strand, within BWI76_RS01355at 277.221 kb on - strand, within BWI76_RS01355at 277.252 kb on + strand, within BWI76_RS01355at 277.277 kb on - strandat 277.306 kb on - strandat 277.344 kb on + strandat 277.426 kb on - strandat 277.458 kb on - strandat 277.470 kb on - strandat 277.497 kb on + strandat 277.545 kb on - strandat 277.545 kb on - strandat 277.562 kb on + strandat 277.602 kb on + strand, within BWI76_RS01360at 277.602 kb on + strand, within BWI76_RS01360at 277.652 kb on - strand, within BWI76_RS01360at 277.814 kb on - strand, within BWI76_RS01360at 277.907 kb on + strand, within BWI76_RS01360at 277.933 kb on + strand, within BWI76_RS01360

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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276,235 + -0.4
276,235 + -0.1
276,262 + -0.2
276,308 + -1.3
276,740 + BWI76_RS01350 0.66 -1.7
277,128 - BWI76_RS01355 0.33 +0.3
277,128 - BWI76_RS01355 0.33 -0.1
277,174 + BWI76_RS01355 0.47 -0.4
277,174 + BWI76_RS01355 0.47 +0.3
277,182 - BWI76_RS01355 0.50 +0.2
277,213 + BWI76_RS01355 0.60 -0.0
277,221 - BWI76_RS01355 0.62 -0.4
277,252 + BWI76_RS01355 0.72 -0.1
277,277 - +1.9
277,306 - +0.1
277,344 + -0.5
277,426 - +0.1
277,458 - +1.1
277,470 - -0.2
277,497 + +1.0
277,545 - +0.9
277,545 - +0.6
277,562 + -0.5
277,602 + BWI76_RS01360 0.12 +0.0
277,602 + BWI76_RS01360 0.12 +2.1
277,652 - BWI76_RS01360 0.16 +0.0
277,814 - BWI76_RS01360 0.30 +0.2
277,907 + BWI76_RS01360 0.38 -1.5
277,933 + BWI76_RS01360 0.40 +0.0

Or see this region's nucleotide sequence