Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00680

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00675 and BWI76_RS00680 overlap by 4 nucleotidesBWI76_RS00680 and BWI76_RS00685 are separated by 159 nucleotidesBWI76_RS00685 and BWI76_RS00690 are separated by 50 nucleotides BWI76_RS00675: BWI76_RS00675 - L-rhamnose isomerase (EC 5.3.1.14) (from data), at 137,946 to 139,205 _RS00675 BWI76_RS00680: BWI76_RS00680 - Rhamnulokinase (EC 2.7.1.5) (from data), at 139,202 to 140,668 _RS00680 BWI76_RS00685: BWI76_RS00685 - ABC transporter ATP-binding protein, at 140,828 to 140,929 _RS00685 BWI76_RS00690: BWI76_RS00690 - transcriptional activator RhaS, at 140,980 to 141,816 _RS00690 Position (kb) 139 140 141Strain fitness (log2 ratio) -2 -1 0 1 2 3at 138.211 kb on + strand, within BWI76_RS00675at 138.225 kb on - strand, within BWI76_RS00675at 138.375 kb on - strand, within BWI76_RS00675at 138.501 kb on - strand, within BWI76_RS00675at 138.501 kb on - strand, within BWI76_RS00675at 138.530 kb on + strand, within BWI76_RS00675at 138.543 kb on - strand, within BWI76_RS00675at 138.543 kb on - strand, within BWI76_RS00675at 138.563 kb on - strand, within BWI76_RS00675at 138.715 kb on + strand, within BWI76_RS00675at 138.723 kb on - strand, within BWI76_RS00675at 138.738 kb on - strand, within BWI76_RS00675at 138.757 kb on + strand, within BWI76_RS00675at 138.767 kb on + strand, within BWI76_RS00675at 138.767 kb on + strandat 138.775 kb on - strand, within BWI76_RS00675at 138.775 kb on - strand, within BWI76_RS00675at 138.775 kb on - strand, within BWI76_RS00675at 138.821 kb on + strand, within BWI76_RS00675at 138.973 kb on - strand, within BWI76_RS00675at 138.973 kb on - strand, within BWI76_RS00675at 138.998 kb on - strand, within BWI76_RS00675at 139.031 kb on - strand, within BWI76_RS00675at 139.130 kb on - strandat 139.186 kb on + strandat 139.228 kb on - strandat 139.238 kb on - strandat 139.276 kb on + strandat 139.385 kb on + strand, within BWI76_RS00680at 139.436 kb on - strand, within BWI76_RS00680at 139.438 kb on + strand, within BWI76_RS00680at 139.530 kb on + strand, within BWI76_RS00680at 139.540 kb on + strand, within BWI76_RS00680at 139.565 kb on + strand, within BWI76_RS00680at 139.836 kb on - strand, within BWI76_RS00680at 140.084 kb on + strand, within BWI76_RS00680at 140.181 kb on - strand, within BWI76_RS00680at 140.190 kb on - strand, within BWI76_RS00680at 140.233 kb on + strand, within BWI76_RS00680at 140.315 kb on + strand, within BWI76_RS00680at 140.575 kb on + strandat 140.575 kb on + strandat 140.582 kb on + strandat 140.583 kb on - strandat 140.708 kb on - strandat 140.777 kb on + strandat 140.785 kb on - strandat 140.985 kb on - strandat 140.985 kb on - strandat 140.986 kb on + strandat 140.986 kb on + strandat 140.986 kb on + strandat 140.986 kb on + strandat 141.138 kb on + strand, within BWI76_RS00690at 141.138 kb on + strand, within BWI76_RS00690at 141.138 kb on + strand, within BWI76_RS00690at 141.226 kb on + strand, within BWI76_RS00690at 141.328 kb on + strand, within BWI76_RS00690at 141.368 kb on + strand, within BWI76_RS00690at 141.369 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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138,211 + BWI76_RS00675 0.21 -0.5
138,225 - BWI76_RS00675 0.22 -0.4
138,375 - BWI76_RS00675 0.34 -0.0
138,501 - BWI76_RS00675 0.44 -0.2
138,501 - BWI76_RS00675 0.44 +0.6
138,530 + BWI76_RS00675 0.46 +0.0
138,543 - BWI76_RS00675 0.47 +0.5
138,543 - BWI76_RS00675 0.47 +0.5
138,563 - BWI76_RS00675 0.49 +1.1
138,715 + BWI76_RS00675 0.61 +0.6
138,723 - BWI76_RS00675 0.62 -0.4
138,738 - BWI76_RS00675 0.63 -0.2
138,757 + BWI76_RS00675 0.64 +1.3
138,767 + BWI76_RS00675 0.65 +0.8
138,767 + +1.1
138,775 - BWI76_RS00675 0.66 +0.6
138,775 - BWI76_RS00675 0.66 -0.2
138,775 - BWI76_RS00675 0.66 +0.0
138,821 + BWI76_RS00675 0.69 +0.5
138,973 - BWI76_RS00675 0.82 -0.7
138,973 - BWI76_RS00675 0.82 +0.1
138,998 - BWI76_RS00675 0.83 +1.1
139,031 - BWI76_RS00675 0.86 +0.2
139,130 - -0.4
139,186 + +1.4
139,228 - +0.4
139,238 - -0.1
139,276 + +0.1
139,385 + BWI76_RS00680 0.12 -1.4
139,436 - BWI76_RS00680 0.16 -0.5
139,438 + BWI76_RS00680 0.16 +0.3
139,530 + BWI76_RS00680 0.22 -0.4
139,540 + BWI76_RS00680 0.23 +0.0
139,565 + BWI76_RS00680 0.25 -0.4
139,836 - BWI76_RS00680 0.43 -1.2
140,084 + BWI76_RS00680 0.60 +0.7
140,181 - BWI76_RS00680 0.67 -0.4
140,190 - BWI76_RS00680 0.67 -0.1
140,233 + BWI76_RS00680 0.70 +0.4
140,315 + BWI76_RS00680 0.76 +0.1
140,575 + +0.2
140,575 + +0.0
140,582 + +1.1
140,583 - -0.0
140,708 - -2.4
140,777 + +0.5
140,785 - -0.6
140,985 - +0.1
140,985 - -0.4
140,986 + +0.4
140,986 + +0.1
140,986 + -1.0
140,986 + -1.1
141,138 + BWI76_RS00690 0.19 +0.2
141,138 + BWI76_RS00690 0.19 -0.1
141,138 + BWI76_RS00690 0.19 +0.3
141,226 + BWI76_RS00690 0.29 +0.8
141,328 + BWI76_RS00690 0.42 +0.5
141,368 + BWI76_RS00690 0.46 -0.7
141,369 + +3.5

Or see this region's nucleotide sequence