Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00380 and BWI76_RS00385 are separated by 258 nucleotides BWI76_RS00385 and BWI76_RS00390 are separated by 8 nucleotides
BWI76_RS00380: BWI76_RS00380 - oxygen-independent coproporphyrinogen III oxidase, at 79,246 to 80,619
_RS00380
BWI76_RS00385: BWI76_RS00385 - nitrogen assimilation regulatory protein, at 80,878 to 82,287
_RS00385
BWI76_RS00390: BWI76_RS00390 - two-component system sensor histidine kinase NtrB, at 82,296 to 83,345
_RS00390
Position (kb) 80
81
82
83 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 79.938 kb on + strand, within BWI76_RS00380 at 79.946 kb on - strand, within BWI76_RS00380 at 80.038 kb on - strand, within BWI76_RS00380 at 80.157 kb on - strand, within BWI76_RS00380 at 80.259 kb on + strand, within BWI76_RS00380 at 80.422 kb on + strand, within BWI76_RS00380 at 80.524 kb on + strand at 80.636 kb on + strand at 80.686 kb on - strand at 80.720 kb on - strand at 80.724 kb on + strand at 80.812 kb on - strand at 80.913 kb on + strand at 80.959 kb on + strand at 80.983 kb on + strand at 80.989 kb on - strand at 81.125 kb on + strand, within BWI76_RS00385 at 81.163 kb on + strand, within BWI76_RS00385 at 81.163 kb on + strand, within BWI76_RS00385 at 81.163 kb on + strand, within BWI76_RS00385 at 81.171 kb on - strand, within BWI76_RS00385 at 81.221 kb on - strand, within BWI76_RS00385 at 81.241 kb on + strand, within BWI76_RS00385 at 81.432 kb on + strand, within BWI76_RS00385 at 81.432 kb on + strand, within BWI76_RS00385 at 81.600 kb on + strand, within BWI76_RS00385 at 81.652 kb on - strand, within BWI76_RS00385 at 81.934 kb on - strand, within BWI76_RS00385 at 82.010 kb on + strand, within BWI76_RS00385 at 82.010 kb on - strand, within BWI76_RS00385 at 82.201 kb on + strand at 82.201 kb on + strand at 82.209 kb on - strand at 82.209 kb on - strand at 82.255 kb on - strand at 82.334 kb on + strand at 82.334 kb on + strand at 82.400 kb on + strand at 82.493 kb on - strand, within BWI76_RS00390 at 82.861 kb on + strand, within BWI76_RS00390 at 82.889 kb on + strand, within BWI76_RS00390 at 83.033 kb on + strand, within BWI76_RS00390 at 83.040 kb on + strand, within BWI76_RS00390 at 83.142 kb on + strand, within BWI76_RS00390 at 83.186 kb on - strand, within BWI76_RS00390
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 79,938 + BWI76_RS00380 0.50 -0.8 79,946 - BWI76_RS00380 0.51 -0.9 80,038 - BWI76_RS00380 0.58 -0.4 80,157 - BWI76_RS00380 0.66 -0.3 80,259 + BWI76_RS00380 0.74 -0.3 80,422 + BWI76_RS00380 0.86 +0.1 80,524 + -0.2 80,636 + +0.1 80,686 - +0.5 80,720 - +0.3 80,724 + -0.2 80,812 - -0.8 80,913 + -1.0 80,959 + +1.3 80,983 + -1.1 80,989 - -1.2 81,125 + BWI76_RS00385 0.18 -0.3 81,163 + BWI76_RS00385 0.20 -1.4 81,163 + BWI76_RS00385 0.20 -2.6 81,163 + BWI76_RS00385 0.20 -1.2 81,171 - BWI76_RS00385 0.21 -0.0 81,221 - BWI76_RS00385 0.24 -1.5 81,241 + BWI76_RS00385 0.26 -0.6 81,432 + BWI76_RS00385 0.39 -0.4 81,432 + BWI76_RS00385 0.39 -1.0 81,600 + BWI76_RS00385 0.51 -0.8 81,652 - BWI76_RS00385 0.55 -0.6 81,934 - BWI76_RS00385 0.75 -1.9 82,010 + BWI76_RS00385 0.80 -0.9 82,010 - BWI76_RS00385 0.80 -1.1 82,201 + -2.6 82,201 + +3.1 82,209 - -0.3 82,209 - -0.3 82,255 - -0.6 82,334 + -2.0 82,334 + +0.7 82,400 + -0.7 82,493 - BWI76_RS00390 0.19 -1.2 82,861 + BWI76_RS00390 0.54 -1.1 82,889 + BWI76_RS00390 0.56 -1.8 83,033 + BWI76_RS00390 0.70 -1.8 83,040 + BWI76_RS00390 0.71 -0.9 83,142 + BWI76_RS00390 0.81 -0.8 83,186 - BWI76_RS00390 0.85 -3.9
Or see this region's nucleotide sequence