Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00385

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00380 and BWI76_RS00385 are separated by 258 nucleotidesBWI76_RS00385 and BWI76_RS00390 are separated by 8 nucleotides BWI76_RS00380: BWI76_RS00380 - oxygen-independent coproporphyrinogen III oxidase, at 79,246 to 80,619 _RS00380 BWI76_RS00385: BWI76_RS00385 - nitrogen assimilation regulatory protein, at 80,878 to 82,287 _RS00385 BWI76_RS00390: BWI76_RS00390 - two-component system sensor histidine kinase NtrB, at 82,296 to 83,345 _RS00390 Position (kb) 80 81 82 83Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 79.938 kb on + strand, within BWI76_RS00380at 79.946 kb on - strand, within BWI76_RS00380at 80.038 kb on - strand, within BWI76_RS00380at 80.157 kb on - strand, within BWI76_RS00380at 80.259 kb on + strand, within BWI76_RS00380at 80.422 kb on + strand, within BWI76_RS00380at 80.524 kb on + strandat 80.636 kb on + strandat 80.686 kb on - strandat 80.720 kb on - strandat 80.724 kb on + strandat 80.812 kb on - strandat 80.913 kb on + strandat 80.959 kb on + strandat 80.983 kb on + strandat 80.989 kb on - strandat 81.125 kb on + strand, within BWI76_RS00385at 81.163 kb on + strand, within BWI76_RS00385at 81.163 kb on + strand, within BWI76_RS00385at 81.163 kb on + strand, within BWI76_RS00385at 81.171 kb on - strand, within BWI76_RS00385at 81.221 kb on - strand, within BWI76_RS00385at 81.241 kb on + strand, within BWI76_RS00385at 81.432 kb on + strand, within BWI76_RS00385at 81.432 kb on + strand, within BWI76_RS00385at 81.600 kb on + strand, within BWI76_RS00385at 81.652 kb on - strand, within BWI76_RS00385at 81.934 kb on - strand, within BWI76_RS00385at 82.010 kb on + strand, within BWI76_RS00385at 82.010 kb on - strand, within BWI76_RS00385at 82.201 kb on + strandat 82.201 kb on + strandat 82.209 kb on - strandat 82.209 kb on - strandat 82.255 kb on - strandat 82.334 kb on + strandat 82.334 kb on + strandat 82.400 kb on + strandat 82.493 kb on - strand, within BWI76_RS00390at 82.861 kb on + strand, within BWI76_RS00390at 82.889 kb on + strand, within BWI76_RS00390at 83.033 kb on + strand, within BWI76_RS00390at 83.040 kb on + strand, within BWI76_RS00390at 83.142 kb on + strand, within BWI76_RS00390at 83.186 kb on - strand, within BWI76_RS00390

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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79,938 + BWI76_RS00380 0.50 -0.8
79,946 - BWI76_RS00380 0.51 -0.9
80,038 - BWI76_RS00380 0.58 -0.4
80,157 - BWI76_RS00380 0.66 -0.3
80,259 + BWI76_RS00380 0.74 -0.3
80,422 + BWI76_RS00380 0.86 +0.1
80,524 + -0.2
80,636 + +0.1
80,686 - +0.5
80,720 - +0.3
80,724 + -0.2
80,812 - -0.8
80,913 + -1.0
80,959 + +1.3
80,983 + -1.1
80,989 - -1.2
81,125 + BWI76_RS00385 0.18 -0.3
81,163 + BWI76_RS00385 0.20 -1.4
81,163 + BWI76_RS00385 0.20 -2.6
81,163 + BWI76_RS00385 0.20 -1.2
81,171 - BWI76_RS00385 0.21 -0.0
81,221 - BWI76_RS00385 0.24 -1.5
81,241 + BWI76_RS00385 0.26 -0.6
81,432 + BWI76_RS00385 0.39 -0.4
81,432 + BWI76_RS00385 0.39 -1.0
81,600 + BWI76_RS00385 0.51 -0.8
81,652 - BWI76_RS00385 0.55 -0.6
81,934 - BWI76_RS00385 0.75 -1.9
82,010 + BWI76_RS00385 0.80 -0.9
82,010 - BWI76_RS00385 0.80 -1.1
82,201 + -2.6
82,201 + +3.1
82,209 - -0.3
82,209 - -0.3
82,255 - -0.6
82,334 + -2.0
82,334 + +0.7
82,400 + -0.7
82,493 - BWI76_RS00390 0.19 -1.2
82,861 + BWI76_RS00390 0.54 -1.1
82,889 + BWI76_RS00390 0.56 -1.8
83,033 + BWI76_RS00390 0.70 -1.8
83,040 + BWI76_RS00390 0.71 -0.9
83,142 + BWI76_RS00390 0.81 -0.8
83,186 - BWI76_RS00390 0.85 -3.9

Or see this region's nucleotide sequence