Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4095

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
4,915,937	-		Shewana3_4093	0.48	-0.8
4,915,939	-		Shewana3_4093	0.48	-1.4
4,915,969	-		Shewana3_4093	0.51	-2.9
4,916,000	+		Shewana3_4093	0.54	+0.2
4,916,068	+		Shewana3_4093	0.60	-2.4
4,916,076	-		Shewana3_4093	0.61	-1.4
4,916,083	+		Shewana3_4093	0.62	-1.1
4,916,146	-		Shewana3_4093	0.68	-1.1
4,916,156	-		Shewana3_4093	0.69	-0.7
4,916,192	+		Shewana3_4093	0.72	-1.2
4,916,217	+		Shewana3_4093	0.74	-1.6
4,916,217	+		Shewana3_4093	0.74	-1.3
4,916,217	+		Shewana3_4093	0.74	-0.4
4,916,217	+		Shewana3_4093	0.74	-0.5
4,916,249	-		Shewana3_4093	0.77	-0.4
4,916,249	-		Shewana3_4093	0.77	-1.2
4,916,264	+		Shewana3_4093	0.79	-0.5
4,916,275	+		Shewana3_4093	0.80	-0.8
4,916,275	+		Shewana3_4093	0.80	-0.6
4,916,278	+		Shewana3_4093	0.80	-1.3
4,916,283	-		Shewana3_4093	0.80	-1.4
4,916,288	+		Shewana3_4093	0.81	-0.9
4,916,288	+		Shewana3_4093	0.81	-1.1
4,916,288	+		Shewana3_4093	0.81	-2.7
4,916,288	+		Shewana3_4093	0.81	-1.7
4,916,288	+		Shewana3_4093	0.81	+0.7
4,916,293	+		Shewana3_4093	0.81	-1.1
4,916,296	-		Shewana3_4093	0.82	+1.0
4,916,296	-		Shewana3_4093	0.82	-0.5
4,916,296	-		Shewana3_4093	0.82	-1.2
4,916,296	-		Shewana3_4093	0.82	-0.5
4,916,296	-		Shewana3_4093	0.82	-0.1
4,916,311	+		Shewana3_4093	0.83	-0.8
4,916,360	+		Shewana3_4093	0.88	-0.5
4,916,367	+		Shewana3_4093	0.88	-0.2
4,916,387	-				-0.2
4,916,388	+				-2.1
4,916,388	+				-2.5
4,916,388	+				-1.4
4,916,396	+				-2.0
4,916,396	-				-2.4
4,916,396	-				-0.7
4,916,396	-				-0.1
4,916,415	+				+0.1
4,916,415	+				-0.0
4,916,415	+				-0.5
4,916,416	+				-1.5
4,916,423	-				-0.9
4,916,423	-				-1.9
4,916,423	-				+1.9
4,916,423	-				-3.2
4,916,423	-				-1.6
4,916,423	-				-1.8
4,916,423	-				-1.1
4,916,423	-				+0.4
4,916,442	+				-1.8
4,916,442	+				-1.0
4,916,443	-				+0.3
4,916,452	+				-3.0
4,916,501	+				+0.3
4,916,552	+				-1.6
4,916,555	+				-0.2
4,916,555	+				-1.3
4,916,563	-		Shewana3_4094	0.10	+0.9
4,916,563	-		Shewana3_4094	0.10	+0.2
4,916,563	-		Shewana3_4094	0.10	-0.1
4,916,564	-		Shewana3_4094	0.10	-0.7
4,916,565	+		Shewana3_4094	0.11	-0.0
4,916,565	+		Shewana3_4094	0.11	+1.7
4,916,565	+		Shewana3_4094	0.11	-1.3
4,916,565	+		Shewana3_4094	0.11	-0.9
4,916,565	+		Shewana3_4094	0.11	-2.1
4,916,573	-		Shewana3_4094	0.13	+0.0
4,916,573	-		Shewana3_4094	0.13	-0.7
4,916,573	-		Shewana3_4094	0.13	-1.8
4,916,595	+		Shewana3_4094	0.19	+1.1
4,916,619	+		Shewana3_4094	0.25	-0.8
4,916,642	+		Shewana3_4094	0.31	-0.2
4,916,787	-		Shewana3_4094	0.69	-2.0
4,916,889	+				-2.1
4,916,914	+				-0.7
4,916,914	+				+1.9
4,916,914	+				+0.3
4,916,922	-				+1.9
4,916,922	-				+0.4
4,916,933	+				-0.9
4,916,941	-				+1.9
4,916,945	+				+0.9
4,916,965	+				+1.9
4,916,965	+				-0.7
4,916,973	+				-3.0
4,916,973	-				+0.0
4,917,031	+				-0.9
4,917,031	+				+1.9
4,917,031	+				+1.3
4,917,031	+				-1.5
4,917,063	-		Shewana3_4095	0.11	-1.6
4,917,074	+		Shewana3_4095	0.11	+0.9
4,917,079	+		Shewana3_4095	0.12	+0.4
4,917,082	-		Shewana3_4095	0.12	-0.2
4,917,082	-		Shewana3_4095	0.12	-0.9
4,917,120	+		Shewana3_4095	0.14	-1.2
4,917,120	+		Shewana3_4095	0.14	+0.7
4,917,120	+		Shewana3_4095	0.14	-0.1
4,917,120	+		Shewana3_4095	0.14	-1.5
4,917,128	-		Shewana3_4095	0.15	+0.9
4,917,129	-		Shewana3_4095	0.15	-0.5
4,917,129	-		Shewana3_4095	0.15	+3.3
4,917,147	+		Shewana3_4095	0.16	+2.2
4,917,147	+		Shewana3_4095	0.16	-1.3
4,917,147	+		Shewana3_4095	0.16	-0.2
4,917,150	-		Shewana3_4095	0.16	-0.7
4,917,155	-		Shewana3_4095	0.17	+0.5
4,917,156	+		Shewana3_4095	0.17	-0.3
4,917,156	+		Shewana3_4095	0.17	-1.2
4,917,156	+		Shewana3_4095	0.17	-1.8
4,917,164	-		Shewana3_4095	0.17	+1.9
4,917,164	-		Shewana3_4095	0.17	+1.9
4,917,171	+		Shewana3_4095	0.18	-1.1
4,917,218	+		Shewana3_4095	0.21	-2.6
4,917,222	-		Shewana3_4095	0.21	+1.5
4,917,229	+		Shewana3_4095	0.21	+0.5
4,917,237	-		Shewana3_4095	0.22	+0.3
4,917,257	+		Shewana3_4095	0.23	-0.8
4,917,265	-		Shewana3_4095	0.24	+0.3
4,917,274	+		Shewana3_4095	0.24	-0.9
4,917,281	-		Shewana3_4095	0.25	+0.9
4,917,332	+		Shewana3_4095	0.28	+0.7
4,917,396	-		Shewana3_4095	0.32	+1.9
4,917,415	+		Shewana3_4095	0.33	+0.5
4,917,485	+		Shewana3_4095	0.38	-1.1
4,917,493	-		Shewana3_4095	0.38	+0.3
4,917,503	+		Shewana3_4095	0.39	-0.8
4,917,524	+		Shewana3_4095	0.40	+0.9
4,917,532	-		Shewana3_4095	0.41	+1.9
4,917,532	-		Shewana3_4095	0.41	+0.9
4,917,594	+		Shewana3_4095	0.45	-0.7
4,917,613	+		Shewana3_4095	0.46	-1.1
4,917,613	+		Shewana3_4095	0.46	-0.8
4,917,613	+		Shewana3_4095	0.46	-1.4
4,917,635	+		Shewana3_4095	0.47	-0.5
4,917,635	+		Shewana3_4095	0.47	+0.4
4,917,635	+		Shewana3_4095	0.47	+0.5
4,917,635	+		Shewana3_4095	0.47	-0.5
4,917,635	+		Shewana3_4095	0.47	-0.1
4,917,640	+		Shewana3_4095	0.48	+0.1
4,917,643	-		Shewana3_4095	0.48	+2.7
4,917,649	-		Shewana3_4095	0.48	-3.2
4,917,650	-		Shewana3_4095	0.48	-0.7
4,917,662	+		Shewana3_4095	0.49	+1.9
4,917,700	-		Shewana3_4095	0.51	-0.2
4,917,708	-		Shewana3_4095	0.52	+1.9
4,917,708	-		Shewana3_4095	0.52	-0.9
4,917,708	-		Shewana3_4095	0.52	+1.9
4,917,708	-		Shewana3_4095	0.52	+0.3
4,917,806	+		Shewana3_4095	0.58	-1.7
4,917,806	+		Shewana3_4095	0.58	-1.1
4,917,944	+		Shewana3_4095	0.67	+1.9
4,918,014	+		Shewana3_4095	0.71	-1.5
4,918,014	+		Shewana3_4095	0.71	+0.9
4,918,014	+		Shewana3_4095	0.71	-0.9
4,918,014	+		Shewana3_4095	0.71	-1.0
4,918,015	+		Shewana3_4095	0.72	-0.2
4,918,022	-		Shewana3_4095	0.72	+1.9
4,918,022	-		Shewana3_4095	0.72	+0.1
4,918,022	-		Shewana3_4095	0.72	+0.9
4,918,058	+		Shewana3_4095	0.74	-0.5
4,918,073	+		Shewana3_4095	0.75	+0.9
4,918,073	+		Shewana3_4095	0.75	-1.7
4,918,080	+		Shewana3_4095	0.76	-0.6
4,918,088	-		Shewana3_4095	0.76	+1.9
4,918,110	+		Shewana3_4095	0.78	-1.6
4,918,112	-		Shewana3_4095	0.78	+1.9
4,918,112	-		Shewana3_4095	0.78	-0.1
4,918,147	+		Shewana3_4095	0.80	-1.1
4,918,148	+		Shewana3_4095	0.80	-0.3
4,918,173	+		Shewana3_4095	0.82	+0.3
4,918,190	-		Shewana3_4095	0.83	+1.9
4,918,202	+		Shewana3_4095	0.83	+0.3
4,918,210	-		Shewana3_4095	0.84	+1.9
4,918,212	+		Shewana3_4095	0.84	-0.4
4,918,213	+		Shewana3_4095	0.84	-0.7
4,918,213	+		Shewana3_4095	0.84	+0.3
4,918,213	+		Shewana3_4095	0.84	-2.2
4,918,220	-		Shewana3_4095	0.85	+0.9
4,918,220	-		Shewana3_4095	0.85	+1.9
4,918,220	-		Shewana3_4095	0.85	-2.1
4,918,220	-		Shewana3_4095	0.85	+1.9
4,918,308	+				-3.2
4,918,315	+				-0.4
4,918,316	-				+0.9
4,918,316	-				+0.9
4,918,323	-				+1.9
4,918,371	+				-0.4
4,918,371	+				+0.3
4,918,371	+				-0.6
4,918,379	-				+1.9
4,918,379	-				+0.3
4,918,379	-				+1.9
4,918,380	-				-1.6
4,918,380	-				+1.9
4,918,398	-				-0.1
4,918,399	+				+0.0
4,918,443	-				+0.9
4,918,468	+				+0.9
4,918,478	+				-0.0
4,918,478	+				+1.3
4,918,478	+				-2.2
4,918,486	-				-1.1
4,918,505	+				+0.3
4,918,513	-				+0.6
4,918,535	+		Shewana3_4096	0.11	+0.5
4,918,536	+		Shewana3_4096	0.11	+1.9
4,918,542	+		Shewana3_4096	0.12	-1.6
4,918,542	+		Shewana3_4096	0.12	+1.5
4,918,550	-		Shewana3_4096	0.13	-0.2
4,918,565	+		Shewana3_4096	0.15	-0.1
4,918,565	+		Shewana3_4096	0.15	-1.1
4,918,624	+		Shewana3_4096	0.23	+0.3
4,918,631	-		Shewana3_4096	0.24	+1.9
4,918,691	-		Shewana3_4096	0.32	+0.3
4,918,717	+		Shewana3_4096	0.36	-0.4
4,918,717	+		Shewana3_4096	0.36	-0.1
4,918,717	+		Shewana3_4096	0.36	-2.0
4,918,717	+		Shewana3_4096	0.36	-0.7
4,918,717	+		Shewana3_4096	0.36	+0.3
4,918,717	+		Shewana3_4096	0.36	+1.5
4,918,717	+		Shewana3_4096	0.36	+1.5
4,918,717	+		Shewana3_4096	0.36	-1.3
4,918,717	+		Shewana3_4096	0.36	+1.2
4,918,725	-		Shewana3_4096	0.37	-1.3
4,918,725	-		Shewana3_4096	0.37	+1.0
4,918,725	-		Shewana3_4096	0.37	+0.1
4,918,725	-		Shewana3_4096	0.37	-2.0
4,918,725	-		Shewana3_4096	0.37	+0.9
4,918,727	+		Shewana3_4096	0.37	-2.5
4,918,737	+		Shewana3_4096	0.38	+0.9
4,918,737	+		Shewana3_4096	0.38	-1.1
4,918,737	+		Shewana3_4096	0.38	-0.1
4,918,745	-		Shewana3_4096	0.40	+3.7
4,918,745	-		Shewana3_4096	0.40	+0.9
4,918,745	-		Shewana3_4096	0.40	-0.1
4,918,745	-		Shewana3_4096	0.40	-1.8
4,918,745	-		Shewana3_4096	0.40	+1.9
4,918,745	-		Shewana3_4096	0.40	+0.5
4,918,802	+		Shewana3_4096	0.47	-0.3
4,918,802	+		Shewana3_4096	0.47	-0.9
4,918,811	-		Shewana3_4096	0.49	+1.9
4,918,828	+		Shewana3_4096	0.51	-0.3
4,918,828	+		Shewana3_4096	0.51	+0.1
4,918,842	+		Shewana3_4096	0.53	+1.5
4,918,842	+		Shewana3_4096	0.53	-0.5
4,918,842	+		Shewana3_4096	0.53	-1.9
4,918,842	+		Shewana3_4096	0.53	-0.7
4,918,842	+		Shewana3_4096	0.53	-0.5
4,918,850	-		Shewana3_4096	0.54	+1.9
4,918,852	+		Shewana3_4096	0.54	+0.3
4,918,865	+		Shewana3_4096	0.56	+1.4
4,918,865	+		Shewana3_4096	0.56	-1.5
4,918,865	+		Shewana3_4096	0.56	-0.1
4,918,865	+		Shewana3_4096	0.56	+0.3
4,918,865	+		Shewana3_4096	0.56	-1.1
4,918,865	+		Shewana3_4096	0.56	+0.0
4,918,865	+		Shewana3_4096	0.56	-2.6
4,918,865	+		Shewana3_4096	0.56	-4.3
4,918,865	+		Shewana3_4096	0.56	+0.9
4,918,865	+		Shewana3_4096	0.56	+0.3
4,918,865	+		Shewana3_4096	0.56	-0.5
4,918,865	+		Shewana3_4096	0.56	+0.5
4,918,865	+		Shewana3_4096	0.56	-1.7
4,918,865	+		Shewana3_4096	0.56	+0.3
4,918,873	-		Shewana3_4096	0.57	+1.9
4,918,873	-		Shewana3_4096	0.57	+1.9
4,918,873	-		Shewana3_4096	0.57	+1.9
4,918,873	-		Shewana3_4096	0.57	+0.9
4,918,873	-		Shewana3_4096	0.57	+1.9
4,918,873	-		Shewana3_4096	0.57	+1.9
4,918,873	-		Shewana3_4096	0.57	+1.9
4,918,892	+		Shewana3_4096	0.60	-0.2
4,918,915	-		Shewana3_4096	0.63	+0.3
4,918,946	+		Shewana3_4096	0.67	+0.7
4,918,954	-		Shewana3_4096	0.68	+1.9
4,918,956	+		Shewana3_4096	0.68	+1.3
4,918,956	+		Shewana3_4096	0.68	+0.4
4,918,956	+		Shewana3_4096	0.68	-0.1
4,918,964	-		Shewana3_4096	0.70	+1.9
4,918,966	+		Shewana3_4096	0.70	+1.2
4,918,969	-		Shewana3_4096	0.70	+1.9
4,918,988	+		Shewana3_4096	0.73	+0.0
4,918,995	-		Shewana3_4096	0.74	+0.3
4,918,996	-		Shewana3_4096	0.74	+1.9
4,919,011	+		Shewana3_4096	0.76	+0.3
4,919,023	+		Shewana3_4096	0.78	+0.5
4,919,023	+		Shewana3_4096	0.78	-1.7
4,919,023	+		Shewana3_4096	0.78	+0.6
4,919,033	-		Shewana3_4096	0.79	+1.4
4,919,033	-		Shewana3_4096	0.79	+1.9
4,919,038	+		Shewana3_4096	0.80	+0.8
4,919,048	+		Shewana3_4096	0.81	-1.9
4,919,048	+		Shewana3_4096	0.81	+0.3
4,919,048	+		Shewana3_4096	0.81	+0.1
4,919,050	+		Shewana3_4096	0.81	-0.2
4,919,053	+		Shewana3_4096	0.82	+0.0
4,919,055	+		Shewana3_4096	0.82	+0.2
4,919,055	+		Shewana3_4096	0.82	+0.9
4,919,055	+		Shewana3_4096	0.82	+1.0
4,919,055	+		Shewana3_4096	0.82	+0.5
4,919,055	+		Shewana3_4096	0.82	-0.3
4,919,056	-		Shewana3_4096	0.82	+1.9
4,919,058	+		Shewana3_4096	0.82	+2.1
4,919,058	-		Shewana3_4096	0.82	+1.9
4,919,058	-		Shewana3_4096	0.82	+1.9
4,919,058	-		Shewana3_4096	0.82	-1.7
4,919,061	-		Shewana3_4096	0.83	-1.7
4,919,061	-		Shewana3_4096	0.83	+1.9
4,919,063	-		Shewana3_4096	0.83	+1.9
4,919,063	-		Shewana3_4096	0.83	+0.9
4,919,063	-		Shewana3_4096	0.83	+1.9
4,919,063	-		Shewana3_4096	0.83	-1.1
4,919,066	+		Shewana3_4096	0.84	+0.7
4,919,068	-		Shewana3_4096	0.84	-1.3
4,919,262	+				-0.5
4,919,347	-		Shewana3_4097	0.13	-1.0
4,919,354	+		Shewana3_4097	0.14	+1.1
4,919,354	+		Shewana3_4097	0.14	+1.9
4,919,354	+		Shewana3_4097	0.14	-1.2
4,919,354	+		Shewana3_4097	0.14	-0.7
4,919,362	-		Shewana3_4097	0.15	-1.7
4,919,362	-		Shewana3_4097	0.15	+0.6
4,919,362	-		Shewana3_4097	0.15	-0.3
4,919,362	-		Shewana3_4097	0.15	-0.9
4,919,362	-		Shewana3_4097	0.15	-1.7
4,919,362	-		Shewana3_4097	0.15	-0.8
4,919,390	-		Shewana3_4097	0.18	-1.2
4,919,391	-		Shewana3_4097	0.18	-0.1
4,919,391	-		Shewana3_4097	0.18	+0.1
4,919,391	-		Shewana3_4097	0.18	-0.3
4,919,437	-		Shewana3_4097	0.23	-0.1
4,919,452	+		Shewana3_4097	0.25	+1.9
4,919,452	+		Shewana3_4097	0.25	+1.0
4,919,454	+		Shewana3_4097	0.25	+1.9
4,919,454	+		Shewana3_4097	0.25	+0.5
4,919,454	+		Shewana3_4097	0.25	+1.9
4,919,454	+		Shewana3_4097	0.25	+0.9
4,919,460	-		Shewana3_4097	0.26	-1.8
4,919,460	-		Shewana3_4097	0.26	-0.3
4,919,460	-		Shewana3_4097	0.26	-3.4