Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3386 and Shewana3_3387 are separated by 110 nucleotides Shewana3_3387 and Shewana3_3388 are separated by 90 nucleotides Shewana3_3388 and Shewana3_3389 are separated by 87 nucleotides Shewana3_3389 and Shewana3_3390 are separated by 81 nucleotides Shewana3_3390 and Shewana3_3391 are separated by 57 nucleotides
Shewana3_3386: Shewana3_3386 - hypothetical protein (RefSeq), at 4,058,736 to 4,058,843
_3386
Shewana3_3387: Shewana3_3387 - hypothetical protein (RefSeq), at 4,058,954 to 4,059,406
_3387
Shewana3_3388: Shewana3_3388 - hypothetical protein (RefSeq), at 4,059,497 to 4,059,850
_3388
Shewana3_3389: Shewana3_3389 - putative lipoprotein (RefSeq), at 4,059,938 to 4,060,219
_3389
Shewana3_3390: Shewana3_3390 - hypothetical protein (RefSeq), at 4,060,301 to 4,060,774
_3390
Shewana3_3391: Shewana3_3391 - hypothetical protein (RefSeq), at 4,060,832 to 4,061,092
_3391
Position (kb) 4059
4060 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4058.537 kb on + strand at 4058.537 kb on + strand at 4058.579 kb on + strand at 4059.489 kb on - strand at 4059.500 kb on - strand at 4059.526 kb on + strand at 4059.761 kb on - strand, within Shewana3_3388 at 4059.781 kb on - strand, within Shewana3_3388 at 4059.824 kb on + strand at 4059.832 kb on + strand at 4059.871 kb on - strand at 4060.245 kb on + strand at 4060.258 kb on - strand at 4060.357 kb on + strand, within Shewana3_3390 at 4060.367 kb on + strand, within Shewana3_3390 at 4060.449 kb on - strand, within Shewana3_3390 at 4060.571 kb on + strand, within Shewana3_3390 at 4060.723 kb on - strand, within Shewana3_3390 at 4060.797 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 4,058,537 + -3.9 4,058,537 + -0.5 4,058,579 + -0.8 4,059,489 - -0.1 4,059,500 - -0.6 4,059,526 + +1.3 4,059,761 - Shewana3_3388 0.75 -4.2 4,059,781 - Shewana3_3388 0.80 -2.9 4,059,824 + +0.6 4,059,832 + +0.7 4,059,871 - -0.3 4,060,245 + -2.3 4,060,258 - -0.9 4,060,357 + Shewana3_3390 0.12 -1.7 4,060,367 + Shewana3_3390 0.14 +0.6 4,060,449 - Shewana3_3390 0.31 -0.4 4,060,571 + Shewana3_3390 0.57 -1.4 4,060,723 - Shewana3_3390 0.89 -1.6 4,060,797 - +0.1
Or see this region's nucleotide sequence