Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1534

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,787,810	-		Shewana3_1533	0.89	+2.3
1,787,810	-		Shewana3_1533	0.89	+1.3
1,787,923	-				+0.5
1,788,038	+				+1.3
1,788,050	-				-0.9
1,788,266	-				-0.7
1,788,273	-				+1.3
1,788,281	-				-1.3
1,788,303	+				+1.3
1,788,447	+				-1.3
1,788,514	-				-0.3
1,788,514	-				+1.3
1,788,514	-				+1.3
1,788,561	-				+1.3
1,788,564	+				-0.3
1,788,564	+				+1.3
1,788,572	-				+0.3
1,788,572	-				+1.3
1,788,605	+				+1.3
1,788,605	+				+1.3
1,788,610	+				+1.3
1,788,610	+				+1.3
1,788,610	+				+2.3
1,788,613	-				-0.3
1,788,613	-				+1.3
1,788,618	-				+0.3
1,788,618	-				+1.3
1,788,628	-				+1.3
1,788,685	+				+0.3
1,788,685	+				+1.3
1,788,693	-				+1.3
1,788,693	-				+1.3
1,788,693	-				-0.3
1,788,693	-				+1.3
1,788,695	+				+1.3
1,788,699	+				+1.3
1,788,707	-				+1.3
1,788,709	+				+0.3
1,788,709	+				-1.3
1,788,709	+				+1.3
1,788,709	+				+1.3
1,788,709	+				+1.3
1,788,709	+				+1.3
1,788,709	+				+1.3
1,788,709	+				+0.3
1,788,709	+				+1.3
1,788,709	+				+0.3
1,788,709	+				-0.3
1,788,709	+				+0.3
1,788,709	+				+1.3
1,788,709	+				+1.3
1,788,709	+				+1.3
1,788,709	+				+1.3
1,788,717	-				+1.3
1,788,717	-				+1.3
1,788,717	-				+1.3
1,788,717	-				-0.3
1,788,717	-				+1.3
1,788,717	-				+1.3
1,788,717	-				+1.3
1,788,717	-				+0.3
1,788,717	-				+1.3
1,788,717	-				+1.3
1,788,717	-				+1.3
1,788,717	-				+1.3
1,788,717	-				+2.1
1,788,767	-				+1.3
1,788,806	-		Shewana3_1534	0.10	+1.3
1,788,833	+		Shewana3_1534	0.11	+1.3
1,788,833	+		Shewana3_1534	0.11	+1.3
1,788,868	-		Shewana3_1534	0.13	+1.3
1,788,870	+		Shewana3_1534	0.13	+1.3
1,788,870	+		Shewana3_1534	0.13	+1.3
1,788,878	-		Shewana3_1534	0.13	+0.3
1,788,878	-		Shewana3_1534	0.13	+1.3
1,788,878	-		Shewana3_1534	0.13	+2.3
1,788,911	+		Shewana3_1534	0.14	-0.3
1,788,913	+		Shewana3_1534	0.14	+1.3
1,788,914	-		Shewana3_1534	0.15	+1.3
1,788,914	-		Shewana3_1534	0.15	-0.3
1,788,914	-		Shewana3_1534	0.15	+0.3
1,788,955	+		Shewana3_1534	0.16	+1.3
1,788,965	+		Shewana3_1534	0.17	+0.9
1,788,973	-		Shewana3_1534	0.17	+0.3
1,788,973	-		Shewana3_1534	0.17	+1.3
1,789,128	+		Shewana3_1534	0.23	+1.3
1,789,129	+		Shewana3_1534	0.23	+0.8
1,789,139	-		Shewana3_1534	0.23	+1.3
1,789,180	+		Shewana3_1534	0.25	+1.3
1,789,180	+		Shewana3_1534	0.25	+0.2
1,789,214	+		Shewana3_1534	0.26	+1.3
1,789,227	+		Shewana3_1534	0.27	+1.6
1,789,228	+		Shewana3_1534	0.27	+2.3
1,789,228	+		Shewana3_1534	0.27	-0.7
1,789,235	-		Shewana3_1534	0.27	+1.3
1,789,236	-		Shewana3_1534	0.27	+1.3
1,789,238	+		Shewana3_1534	0.27	+1.3
1,789,238	+		Shewana3_1534	0.27	+0.6
1,789,245	-		Shewana3_1534	0.27	+1.3
1,789,245	-		Shewana3_1534	0.27	+1.3
1,789,252	+		Shewana3_1534	0.28	+0.3
1,789,273	+		Shewana3_1534	0.29	+1.3
1,789,273	+		Shewana3_1534	0.29	-0.3
1,789,273	+		Shewana3_1534	0.29	-0.1
1,789,273	+		Shewana3_1534	0.29	+0.3
1,789,273	+		Shewana3_1534	0.29	+1.3
1,789,273	+		Shewana3_1534	0.29	+0.3
1,789,273	-		Shewana3_1534	0.29	-2.0
1,789,281	+		Shewana3_1534	0.29	+1.3
1,789,281	+		Shewana3_1534	0.29	-1.7
1,789,281	-		Shewana3_1534	0.29	+1.3
1,789,281	-		Shewana3_1534	0.29	+1.3
1,789,289	-		Shewana3_1534	0.29	+0.3
1,789,303	-		Shewana3_1534	0.30	+1.3
1,789,332	-		Shewana3_1534	0.31	+1.3
1,789,336	+		Shewana3_1534	0.31	+0.3
1,789,337	-		Shewana3_1534	0.31	+1.3
1,789,337	-		Shewana3_1534	0.31	+1.3
1,789,346	+		Shewana3_1534	0.31	+3.6
1,789,346	+		Shewana3_1534	0.31	+1.3
1,789,349	-		Shewana3_1534	0.32	+0.3
1,789,354	-		Shewana3_1534	0.32	+1.3
1,789,354	-		Shewana3_1534	0.32	+1.3
1,789,354	-		Shewana3_1534	0.32	+1.3
1,789,359	+		Shewana3_1534	0.32	-0.7
1,789,368	-		Shewana3_1534	0.32	+1.3
1,789,368	-		Shewana3_1534	0.32	+1.3
1,789,383	-		Shewana3_1534	0.33	-0.7
1,789,385	+		Shewana3_1534	0.33	+1.3
1,789,392	-		Shewana3_1534	0.33	-0.3
1,789,417	-		Shewana3_1534	0.34	-0.7
1,789,427	+		Shewana3_1534	0.35	+1.3
1,789,449	+		Shewana3_1534	0.35	+0.3
1,789,536	-		Shewana3_1534	0.39	+1.3
1,789,536	-		Shewana3_1534	0.39	+0.9
1,789,549	+		Shewana3_1534	0.39	+1.3
1,789,556	-		Shewana3_1534	0.40	+1.3
1,789,569	+		Shewana3_1534	0.40	-0.3
1,789,571	+		Shewana3_1534	0.40	+1.3
1,789,571	+		Shewana3_1534	0.40	+1.3
1,789,571	+		Shewana3_1534	0.40	+1.3
1,789,577	+		Shewana3_1534	0.41	+1.3
1,789,579	-		Shewana3_1534	0.41	-0.3
1,789,585	-		Shewana3_1534	0.41	+0.3
1,789,585	-		Shewana3_1534	0.41	+1.3
1,789,587	-		Shewana3_1534	0.41	+1.3
1,789,611	-		Shewana3_1534	0.42	+1.3
1,789,611	-		Shewana3_1534	0.42	+1.3
1,789,611	-		Shewana3_1534	0.42	+1.3
1,789,615	-		Shewana3_1534	0.42	+1.3
1,789,617	-		Shewana3_1534	0.42	-0.3
1,789,625	+		Shewana3_1534	0.42	+1.3
1,789,652	+		Shewana3_1534	0.43	-0.3
1,789,653	-		Shewana3_1534	0.43	+1.3
1,789,688	-		Shewana3_1534	0.45	+1.3
1,789,697	+		Shewana3_1534	0.45	+0.3
1,789,717	+		Shewana3_1534	0.46	+1.3
1,789,736	-		Shewana3_1534	0.47	-0.7
1,789,747	-		Shewana3_1534	0.47	+1.3
1,789,755	+		Shewana3_1534	0.47	+2.3
1,789,756	+		Shewana3_1534	0.48	+0.3
1,789,766	+		Shewana3_1534	0.48	-1.3
1,789,766	+		Shewana3_1534	0.48	+1.9
1,789,766	+		Shewana3_1534	0.48	+0.3
1,789,766	+		Shewana3_1534	0.48	+1.3
1,789,766	+		Shewana3_1534	0.48	-1.0
1,789,766	+		Shewana3_1534	0.48	-0.7
1,789,766	+		Shewana3_1534	0.48	+1.8
1,789,766	+		Shewana3_1534	0.48	+2.9
1,789,766	+		Shewana3_1534	0.48	-0.3
1,789,766	+		Shewana3_1534	0.48	-0.3
1,789,772	-		Shewana3_1534	0.48	+1.3
1,789,772	-		Shewana3_1534	0.48	-0.3
1,789,774	-		Shewana3_1534	0.48	+1.3
1,789,774	-		Shewana3_1534	0.48	+1.3
1,789,774	-		Shewana3_1534	0.48	+1.3
1,789,774	-		Shewana3_1534	0.48	+1.3
1,789,774	-		Shewana3_1534	0.48	+1.3
1,789,774	-		Shewana3_1534	0.48	-2.1
1,789,774	-		Shewana3_1534	0.48	+1.3
1,789,774	-		Shewana3_1534	0.48	+1.3
1,789,774	-		Shewana3_1534	0.48	+1.3
1,789,774	-		Shewana3_1534	0.48	+1.3
1,789,774	-		Shewana3_1534	0.48	+1.3
1,789,774	-		Shewana3_1534	0.48	+1.3
1,789,795	-		Shewana3_1534	0.49	+1.3
1,789,821	+		Shewana3_1534	0.50	-1.0
1,789,829	-		Shewana3_1534	0.50	+1.3
1,789,831	+		Shewana3_1534	0.50	-0.1
1,789,839	-		Shewana3_1534	0.51	+1.3
1,789,863	-		Shewana3_1534	0.52	+1.3
1,789,863	-		Shewana3_1534	0.52	+0.3
1,789,975	+		Shewana3_1534	0.56	+1.3
1,789,975	+		Shewana3_1534	0.56	+1.3
1,789,982	-		Shewana3_1534	0.56	+1.3
1,789,991	+		Shewana3_1534	0.57	-0.1
1,789,991	+		Shewana3_1534	0.57	-0.7
1,789,991	+		Shewana3_1534	0.57	-1.0
1,790,004	-		Shewana3_1534	0.57	+1.3
1,790,021	-		Shewana3_1534	0.58	+0.3
1,790,112	+		Shewana3_1534	0.61	+1.3
1,790,112	+		Shewana3_1534	0.61	-0.1
1,790,112	+		Shewana3_1534	0.61	-3.3
1,790,112	+		Shewana3_1534	0.61	-1.0
1,790,112	+		Shewana3_1534	0.61	+1.3
1,790,112	+		Shewana3_1534	0.61	-0.3
1,790,112	+		Shewana3_1534	0.61	-0.5
1,790,120	-		Shewana3_1534	0.62	-0.3
1,790,120	-		Shewana3_1534	0.62	+1.3
1,790,120	-		Shewana3_1534	0.62	+1.3
1,790,120	-		Shewana3_1534	0.62	+1.3
1,790,120	-		Shewana3_1534	0.62	-0.3
1,790,150	+		Shewana3_1534	0.63	+1.3
1,790,278	-		Shewana3_1534	0.68	+1.3
1,790,318	+		Shewana3_1534	0.70	+1.3
1,790,402	+		Shewana3_1534	0.73	+2.8
1,790,427	-		Shewana3_1534	0.74	+0.3
1,790,494	-		Shewana3_1534	0.76	-0.3
1,790,513	-		Shewana3_1534	0.77	+0.3
1,790,599	+		Shewana3_1534	0.81	+0.4
1,790,661	+		Shewana3_1534	0.83	+0.4
1,790,860	+				+0.3
1,790,870	+				+2.3
1,791,139	-				+1.3
1,791,191	+		Shewana3_1535	0.12	-0.3
1,791,550	+		Shewana3_1535	0.61	-2.1
1,791,558	-		Shewana3_1535	0.62	+0.3
1,791,743	-		Shewana3_1535	0.87	+3.1
1,791,851	+				-1.0
1,791,859	-				+1.3
1,791,859	-				+2.3
1,791,859	-				+1.3
1,791,907	+				+2.3
1,791,909	+				-1.7
1,791,931	-				-0.2