Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0736 and Shewana3_0737 are separated by 168 nucleotides Shewana3_0737 and Shewana3_0738 are separated by 120 nucleotides Shewana3_0738 and Shewana3_0739 are separated by 299 nucleotides
Shewana3_0736: Shewana3_0736 - ATPase domain-containing protein (RefSeq), at 855,172 to 856,803
_0736
Shewana3_0737: Shewana3_0737 - hypothetical protein (RefSeq), at 856,972 to 857,583
_0737
Shewana3_0738: Shewana3_0738 - hypothetical protein (RefSeq), at 857,704 to 857,835
_0738
Shewana3_0739: Shewana3_0739 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 858,135 to 859,724
_0739
Position (kb) 857
858 Strain fitness (log2 ratio) -2
-1
0
1 at 856.710 kb on + strand at 856.727 kb on + strand at 856.962 kb on + strand at 857.079 kb on + strand, within Shewana3_0737 at 857.141 kb on + strand, within Shewana3_0737 at 857.184 kb on + strand, within Shewana3_0737 at 857.557 kb on + strand at 857.564 kb on + strand at 857.565 kb on - strand at 857.572 kb on - strand at 857.820 kb on - strand, within Shewana3_0738 at 857.864 kb on + strand at 858.043 kb on - strand at 858.043 kb on - strand at 858.158 kb on - strand at 858.211 kb on - strand at 858.333 kb on + strand, within Shewana3_0739 at 858.387 kb on + strand, within Shewana3_0739 at 858.447 kb on + strand, within Shewana3_0739 at 858.601 kb on + strand, within Shewana3_0739
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 856,710 + -0.7 856,727 + +0.2 856,962 + +0.1 857,079 + Shewana3_0737 0.17 -0.2 857,141 + Shewana3_0737 0.28 +0.8 857,184 + Shewana3_0737 0.35 -0.1 857,557 + -1.4 857,564 + +0.0 857,565 - +0.3 857,572 - +0.7 857,820 - Shewana3_0738 0.88 -2.4 857,864 + +1.1 858,043 - -0.4 858,043 - -0.9 858,158 - -0.0 858,211 - -2.2 858,333 + Shewana3_0739 0.12 +0.6 858,387 + Shewana3_0739 0.16 +1.7 858,447 + Shewana3_0739 0.20 +0.3 858,601 + Shewana3_0739 0.29 -0.3
Or see this region's nucleotide sequence