Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0105

Experiment: outer cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0103 and Shewana3_0104 overlap by 4 nucleotidesShewana3_0104 and Shewana3_0105 overlap by 1 nucleotidesShewana3_0105 and Shewana3_0106 are separated by 48 nucleotides Shewana3_0103: Shewana3_0103 - formate dehydrogenase beta subunit (RefSeq), at 118,604 to 119,518 _0103 Shewana3_0104: Shewana3_0104 - formate dehydrogenase gamma subunit (RefSeq), at 119,515 to 120,156 _0104 Shewana3_0105: Shewana3_0105 - formate dehydrogenase accessory protein FdhE (RefSeq), at 120,156 to 121,064 _0105 Shewana3_0106: Shewana3_0106 - selenocysteine synthase (RefSeq), at 121,113 to 122,543 _0106 Position (kb) 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1at 119.289 kb on + strand, within Shewana3_0103at 119.297 kb on - strand, within Shewana3_0103at 119.299 kb on + strand, within Shewana3_0103at 119.301 kb on - strand, within Shewana3_0103at 119.355 kb on + strand, within Shewana3_0103at 119.367 kb on - strand, within Shewana3_0103at 119.410 kb on + strand, within Shewana3_0103at 119.490 kb on - strandat 119.819 kb on - strand, within Shewana3_0104at 119.855 kb on - strand, within Shewana3_0104at 119.855 kb on - strand, within Shewana3_0104at 119.874 kb on - strand, within Shewana3_0104at 119.879 kb on + strand, within Shewana3_0104at 119.962 kb on + strand, within Shewana3_0104at 120.087 kb on + strand, within Shewana3_0104at 120.209 kb on + strandat 120.216 kb on + strandat 120.218 kb on + strandat 120.224 kb on - strandat 120.312 kb on - strand, within Shewana3_0105at 120.391 kb on - strand, within Shewana3_0105at 120.447 kb on - strand, within Shewana3_0105at 120.546 kb on + strand, within Shewana3_0105at 120.546 kb on + strand, within Shewana3_0105at 120.656 kb on - strand, within Shewana3_0105at 120.674 kb on + strand, within Shewana3_0105at 120.682 kb on - strand, within Shewana3_0105at 120.756 kb on + strand, within Shewana3_0105at 120.813 kb on + strand, within Shewana3_0105at 120.841 kb on - strand, within Shewana3_0105at 121.019 kb on + strandat 121.078 kb on + strandat 121.079 kb on + strandat 121.152 kb on + strandat 121.152 kb on + strandat 121.152 kb on + strandat 121.178 kb on + strandat 121.281 kb on - strand, within Shewana3_0106at 121.379 kb on + strand, within Shewana3_0106at 121.387 kb on - strand, within Shewana3_0106at 121.395 kb on + strand, within Shewana3_0106at 121.410 kb on + strand, within Shewana3_0106at 121.442 kb on + strand, within Shewana3_0106at 121.476 kb on - strand, within Shewana3_0106at 121.476 kb on - strand, within Shewana3_0106at 121.476 kb on - strand, within Shewana3_0106at 121.572 kb on + strand, within Shewana3_0106at 121.815 kb on + strand, within Shewana3_0106at 121.873 kb on - strand, within Shewana3_0106at 121.873 kb on - strand, within Shewana3_0106at 121.892 kb on + strand, within Shewana3_0106at 121.926 kb on + strand, within Shewana3_0106at 121.948 kb on + strand, within Shewana3_0106at 121.974 kb on + strand, within Shewana3_0106at 121.991 kb on - strand, within Shewana3_0106at 122.020 kb on - strand, within Shewana3_0106

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
remove
119,289 + Shewana3_0103 0.75 -0.7
119,297 - Shewana3_0103 0.76 -0.6
119,299 + Shewana3_0103 0.76 +0.5
119,301 - Shewana3_0103 0.76 -0.8
119,355 + Shewana3_0103 0.82 -0.1
119,367 - Shewana3_0103 0.83 -0.0
119,410 + Shewana3_0103 0.88 -0.4
119,490 - -0.6
119,819 - Shewana3_0104 0.47 -0.4
119,855 - Shewana3_0104 0.53 -0.9
119,855 - Shewana3_0104 0.53 +0.2
119,874 - Shewana3_0104 0.56 +0.4
119,879 + Shewana3_0104 0.57 +0.7
119,962 + Shewana3_0104 0.70 -2.2
120,087 + Shewana3_0104 0.89 +0.1
120,209 + -1.6
120,216 + -0.1
120,218 + -0.7
120,224 - -0.8
120,312 - Shewana3_0105 0.17 +0.4
120,391 - Shewana3_0105 0.26 +0.5
120,447 - Shewana3_0105 0.32 +0.1
120,546 + Shewana3_0105 0.43 -0.3
120,546 + Shewana3_0105 0.43 +0.0
120,656 - Shewana3_0105 0.55 +0.0
120,674 + Shewana3_0105 0.57 -0.1
120,682 - Shewana3_0105 0.58 +0.0
120,756 + Shewana3_0105 0.66 +0.0
120,813 + Shewana3_0105 0.72 -0.8
120,841 - Shewana3_0105 0.75 -0.4
121,019 + -0.0
121,078 + -3.7
121,079 + -1.3
121,152 + -1.1
121,152 + -0.9
121,152 + +1.1
121,178 + -1.5
121,281 - Shewana3_0106 0.12 -0.0
121,379 + Shewana3_0106 0.19 +0.4
121,387 - Shewana3_0106 0.19 +0.4
121,395 + Shewana3_0106 0.20 -1.1
121,410 + Shewana3_0106 0.21 -0.1
121,442 + Shewana3_0106 0.23 +0.4
121,476 - Shewana3_0106 0.25 -1.5
121,476 - Shewana3_0106 0.25 -1.2
121,476 - Shewana3_0106 0.25 +0.4
121,572 + Shewana3_0106 0.32 +0.1
121,815 + Shewana3_0106 0.49 -1.0
121,873 - Shewana3_0106 0.53 +0.2
121,873 - Shewana3_0106 0.53 -0.5
121,892 + Shewana3_0106 0.54 -1.2
121,926 + Shewana3_0106 0.57 -0.2
121,948 + Shewana3_0106 0.58 +0.0
121,974 + Shewana3_0106 0.60 +0.2
121,991 - Shewana3_0106 0.61 +0.7
122,020 - Shewana3_0106 0.63 -1.3

Or see this region's nucleotide sequence