Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4223

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4221 and Shewana3_4222 are separated by 14 nucleotidesShewana3_4222 and Shewana3_4223 are separated by 259 nucleotidesShewana3_4223 and Shewana3_4224 are separated by 120 nucleotidesShewana3_4224 and Shewana3_4225 are separated by 623 nucleotides Shewana3_4221: Shewana3_4221 - hypothetical protein (RefSeq), at 93,556 to 94,818 _4221 Shewana3_4222: Shewana3_4222 - hypothetical protein (RefSeq), at 94,833 to 95,180 _4222 Shewana3_4223: Shewana3_4223 - hypothetical protein (RefSeq), at 95,440 to 96,366 _4223 Shewana3_4224: Shewana3_4224 - hypothetical protein (RefSeq), at 96,487 to 96,696 _4224 Shewana3_4225: Shewana3_4225 - hypothetical protein (RefSeq), at 97,320 to 98,393 _4225 Position (kb) 95 96 97Strain fitness (log2 ratio) -2 -1 0 1at 94.492 kb on - strand, within Shewana3_4221at 94.492 kb on - strand, within Shewana3_4221at 94.769 kb on - strandat 94.852 kb on - strandat 95.025 kb on - strand, within Shewana3_4222at 95.581 kb on + strand, within Shewana3_4223at 95.705 kb on + strand, within Shewana3_4223at 96.864 kb on + strandat 96.864 kb on + strandat 97.205 kb on + strandat 97.205 kb on + strandat 97.213 kb on - strandat 97.252 kb on - strandat 97.292 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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94,492 - Shewana3_4221 0.74 -0.3
94,492 - Shewana3_4221 0.74 -0.1
94,769 - +1.4
94,852 - -0.6
95,025 - Shewana3_4222 0.55 +1.4
95,581 + Shewana3_4223 0.15 -1.8
95,705 + Shewana3_4223 0.29 +1.4
96,864 + +1.4
96,864 + +0.2
97,205 + -0.9
97,205 + -2.0
97,213 - -2.3
97,252 - +0.1
97,292 - -0.5

Or see this region's nucleotide sequence