Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4190 and Shewana3_4191 are separated by 71 nucleotides Shewana3_4191 and Shewana3_4192 are separated by 511 nucleotides Shewana3_4192 and Shewana3_4193 are separated by 130 nucleotides Shewana3_4193 and Shewana3_4194 are separated by 93 nucleotides
Shewana3_4190: Shewana3_4190 - hypothetical protein (RefSeq), at 54,097 to 54,537
_4190
Shewana3_4191: Shewana3_4191 - ferredoxin (RefSeq), at 54,609 to 54,833
_4191
Shewana3_4192: Shewana3_4192 - hypothetical protein (RefSeq), at 55,345 to 55,773
_4192
Shewana3_4193: Shewana3_4193 - hypothetical protein (RefSeq), at 55,904 to 56,452
_4193
Shewana3_4194: Shewana3_4194 - C-5 cytosine-specific DNA methylase (RefSeq), at 56,546 to 57,919
_4194
Position (kb) 55
56 Strain fitness (log2 ratio) -2
-1
0
1 at 54.483 kb on + strand, within Shewana3_4190 at 54.483 kb on + strand, within Shewana3_4190 at 54.483 kb on + strand, within Shewana3_4190 at 54.546 kb on + strand at 54.547 kb on - strand at 54.598 kb on - strand at 54.663 kb on - strand, within Shewana3_4191 at 54.682 kb on + strand, within Shewana3_4191 at 54.714 kb on - strand, within Shewana3_4191 at 54.724 kb on - strand, within Shewana3_4191 at 54.842 kb on - strand at 54.872 kb on + strand at 54.938 kb on - strand at 55.342 kb on - strand at 55.381 kb on + strand at 55.404 kb on + strand, within Shewana3_4192 at 55.412 kb on - strand, within Shewana3_4192 at 55.851 kb on - strand at 56.032 kb on + strand, within Shewana3_4193 at 56.175 kb on + strand, within Shewana3_4193 at 56.229 kb on - strand, within Shewana3_4193 at 56.239 kb on - strand, within Shewana3_4193 at 56.270 kb on + strand, within Shewana3_4193 at 56.273 kb on - strand, within Shewana3_4193 at 56.278 kb on - strand, within Shewana3_4193 at 56.358 kb on - strand, within Shewana3_4193 at 56.538 kb on - strand at 56.770 kb on + strand, within Shewana3_4194
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 54,483 + Shewana3_4190 0.88 -0.9 54,483 + Shewana3_4190 0.88 -2.5 54,483 + Shewana3_4190 0.88 -0.4 54,546 + -0.8 54,547 - -0.0 54,598 - -1.7 54,663 - Shewana3_4191 0.24 +0.0 54,682 + Shewana3_4191 0.32 +0.7 54,714 - Shewana3_4191 0.47 -1.6 54,724 - Shewana3_4191 0.51 -2.6 54,842 - +1.5 54,872 + -0.1 54,938 - -0.1 55,342 - -0.7 55,381 + +0.1 55,404 + Shewana3_4192 0.14 -0.2 55,412 - Shewana3_4192 0.16 -2.5 55,851 - -0.5 56,032 + Shewana3_4193 0.23 -0.2 56,175 + Shewana3_4193 0.49 -1.0 56,229 - Shewana3_4193 0.59 +0.1 56,239 - Shewana3_4193 0.61 +0.2 56,270 + Shewana3_4193 0.67 +0.0 56,273 - Shewana3_4193 0.67 -0.5 56,278 - Shewana3_4193 0.68 -1.2 56,358 - Shewana3_4193 0.83 +0.2 56,538 - -0.2 56,770 + Shewana3_4194 0.16 -0.6
Or see this region's nucleotide sequence