Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4182

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4181 and Shewana3_4182 are separated by 354 nucleotidesShewana3_4182 and Shewana3_4183 are separated by 71 nucleotidesShewana3_4183 and Shewana3_4184 are separated by 82 nucleotides Shewana3_4181: Shewana3_4181 - hypothetical protein (RefSeq), at 47,179 to 47,901 _4181 Shewana3_4182: Shewana3_4182 - hypothetical protein (RefSeq), at 48,256 to 48,957 _4182 Shewana3_4183: Shewana3_4183 - lytic transglycosylase, catalytic (RefSeq), at 49,029 to 49,559 _4183 Shewana3_4184: Shewana3_4184 - IS605 family transposase OrfB (RefSeq), at 49,642 to 50,745 _4184 Position (kb) 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 47.298 kb on + strand, within Shewana3_4181at 47.414 kb on - strand, within Shewana3_4181at 47.517 kb on + strand, within Shewana3_4181at 47.547 kb on + strand, within Shewana3_4181at 47.671 kb on + strand, within Shewana3_4181at 47.689 kb on - strand, within Shewana3_4181at 47.699 kb on - strand, within Shewana3_4181at 48.385 kb on + strand, within Shewana3_4182at 48.474 kb on - strand, within Shewana3_4182at 48.609 kb on - strand, within Shewana3_4182at 48.644 kb on + strand, within Shewana3_4182at 48.652 kb on - strand, within Shewana3_4182at 48.992 kb on - strandat 49.174 kb on - strand, within Shewana3_4183at 49.266 kb on - strand, within Shewana3_4183at 49.268 kb on + strand, within Shewana3_4183at 49.273 kb on + strand, within Shewana3_4183at 49.276 kb on - strand, within Shewana3_4183at 49.281 kb on - strand, within Shewana3_4183at 49.300 kb on - strand, within Shewana3_4183at 49.459 kb on + strand, within Shewana3_4183at 49.469 kb on + strand, within Shewana3_4183at 49.541 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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47,298 + Shewana3_4181 0.16 -1.0
47,414 - Shewana3_4181 0.33 -2.9
47,517 + Shewana3_4181 0.47 +1.8
47,547 + Shewana3_4181 0.51 -1.3
47,671 + Shewana3_4181 0.68 -0.9
47,689 - Shewana3_4181 0.71 -1.3
47,699 - Shewana3_4181 0.72 +0.1
48,385 + Shewana3_4182 0.18 -1.9
48,474 - Shewana3_4182 0.31 +1.4
48,609 - Shewana3_4182 0.50 +1.4
48,644 + Shewana3_4182 0.55 -0.9
48,652 - Shewana3_4182 0.56 -0.2
48,992 - -0.4
49,174 - Shewana3_4183 0.27 -3.6
49,266 - Shewana3_4183 0.45 -2.5
49,268 + Shewana3_4183 0.45 -1.8
49,273 + Shewana3_4183 0.46 +0.1
49,276 - Shewana3_4183 0.47 +1.4
49,281 - Shewana3_4183 0.47 +1.4
49,300 - Shewana3_4183 0.51 -0.9
49,459 + Shewana3_4183 0.81 -0.6
49,469 + Shewana3_4183 0.83 +0.4
49,541 + +0.8

Or see this region's nucleotide sequence