Experiment: MoLS4 with limited (C) D,L-Lactate (7mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt katA and DVUA0092 are separated by 218 nucleotides DVUA0092 and DVUA0093 are separated by 188 nucleotides
DVUA0091: katA - catalase (TIGR), at 123,495 to 124,952
katA
DVUA0092: DVUA0092 - hypothetical protein (TIGR), at 125,171 to 125,650
DVUA0092
DVUA0093: DVUA0093 - chromate transport family protein (TIGR), at 125,839 to 127,176
DVUA0093
Position (kb)
125
126 Strain fitness (log2 ratio)
-1
0
1 at 124.224 kb on + strand, within katA at 124.318 kb on - strand, within katA at 124.326 kb on - strand, within katA at 124.395 kb on + strand, within katA at 124.552 kb on - strand, within katA at 124.622 kb on + strand, within katA at 124.627 kb on - strand, within katA at 124.731 kb on + strand, within katA at 124.928 kb on - strand at 124.951 kb on + strand at 124.954 kb on - strand at 125.054 kb on + strand at 125.054 kb on + strand at 125.075 kb on - strand at 125.348 kb on + strand, within DVUA0092 at 125.417 kb on - strand, within DVUA0092 at 125.424 kb on + strand, within DVUA0092 at 125.520 kb on - strand, within DVUA0092 at 125.597 kb on - strand, within DVUA0092 at 125.629 kb on - strand at 125.694 kb on + strand at 125.717 kb on + strand at 125.725 kb on - strand at 125.762 kb on + strand at 125.787 kb on - strand at 125.791 kb on + strand at 125.809 kb on - strand at 125.861 kb on + strand at 125.965 kb on - strand at 126.010 kb on - strand, within DVUA0093 at 126.013 kb on + strand, within DVUA0093 at 126.033 kb on + strand, within DVUA0093 at 126.033 kb on + strand, within DVUA0093 at 126.058 kb on - strand, within DVUA0093 at 126.068 kb on - strand, within DVUA0093 at 126.068 kb on - strand, within DVUA0093 at 126.142 kb on + strand, within DVUA0093 at 126.190 kb on - strand, within DVUA0093 at 126.287 kb on + strand, within DVUA0093 at 126.373 kb on + strand, within DVUA0093 at 126.383 kb on + strand, within DVUA0093 at 126.388 kb on + strand, within DVUA0093 at 126.396 kb on - strand, within DVUA0093 at 126.396 kb on - strand, within DVUA0093 at 126.398 kb on + strand, within DVUA0093 at 126.474 kb on - strand, within DVUA0093 at 126.501 kb on + strand, within DVUA0093 at 126.530 kb on + strand, within DVUA0093 at 126.550 kb on - strand, within DVUA0093 at 126.629 kb on + strand, within DVUA0093
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with limited (C) D,L-Lactate (7mM) remove 124,224 + katA DVUA0091 0.50 -0.3 124,318 - katA DVUA0091 0.56 -0.2 124,326 - katA DVUA0091 0.57 +0.1 124,395 + katA DVUA0091 0.62 +0.1 124,552 - katA DVUA0091 0.72 +0.1 124,622 + katA DVUA0091 0.77 +0.1 124,627 - katA DVUA0091 0.78 -0.9 124,731 + katA DVUA0091 0.85 -1.7 124,928 - -0.2 124,951 + +0.5 124,954 - +0.1 125,054 + -0.1 125,054 + +0.3 125,075 - -0.2 125,348 + DVUA0092 0.37 +0.3 125,417 - DVUA0092 0.51 +0.2 125,424 + DVUA0092 0.53 -0.1 125,520 - DVUA0092 0.73 -0.2 125,597 - DVUA0092 0.89 +0.3 125,629 - -0.2 125,694 + +0.4 125,717 + -0.2 125,725 - -0.8 125,762 + -0.1 125,787 - -0.1 125,791 + +0.2 125,809 - +0.3 125,861 + +0.4 125,965 - -0.8 126,010 - DVUA0093 0.13 +0.5 126,013 + DVUA0093 0.13 -0.2 126,033 + DVUA0093 0.14 -0.5 126,033 + DVUA0093 0.14 -0.1 126,058 - DVUA0093 0.16 -0.3 126,068 - DVUA0093 0.17 -0.2 126,068 - DVUA0093 0.17 -0.3 126,142 + DVUA0093 0.23 -0.3 126,190 - DVUA0093 0.26 -0.3 126,287 + DVUA0093 0.33 +0.1 126,373 + DVUA0093 0.40 -0.1 126,383 + DVUA0093 0.41 +0.3 126,388 + DVUA0093 0.41 -0.1 126,396 - DVUA0093 0.42 +0.2 126,396 - DVUA0093 0.42 -1.5 126,398 + DVUA0093 0.42 +0.8 126,474 - DVUA0093 0.47 +0.0 126,501 + DVUA0093 0.49 -0.2 126,530 + DVUA0093 0.52 -0.4 126,550 - DVUA0093 0.53 -0.1 126,629 + DVUA0093 0.59 -0.2
Or see this region's nucleotide sequence