Experiment: MoLS4 with limited (C) D,L-Lactate (7mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0567 and DVU0568 are separated by 121 nucleotides DVU0568 and flrA are separated by 278 nucleotides
DVU0567: DVU0567 - TerC family protein (TIGR), at 631,895 to 632,974
DVU0567
DVU0568: DVU0568 - rhodanese-like domain protein (TIGR), at 633,096 to 634,136
DVU0568
DVU0569: flrA - sigma-54 dependent transcriptional regulator (TIGR), at 634,415 to 635,995
flrA
Position (kb) 633
634
635 Strain fitness (log2 ratio) -1
0
1
2 at 632.105 kb on - strand, within DVU0567 at 632.110 kb on - strand, within DVU0567 at 632.190 kb on + strand, within DVU0567 at 632.255 kb on + strand, within DVU0567 at 632.255 kb on + strand, within DVU0567 at 632.263 kb on - strand, within DVU0567 at 632.295 kb on - strand, within DVU0567 at 632.382 kb on - strand, within DVU0567 at 632.393 kb on + strand, within DVU0567 at 632.406 kb on + strand, within DVU0567 at 632.453 kb on + strand, within DVU0567 at 632.634 kb on + strand, within DVU0567 at 632.642 kb on - strand, within DVU0567 at 632.642 kb on - strand, within DVU0567 at 632.694 kb on + strand, within DVU0567 at 632.765 kb on + strand, within DVU0567 at 632.776 kb on + strand, within DVU0567 at 632.791 kb on + strand, within DVU0567 at 632.902 kb on + strand at 633.062 kb on - strand at 633.085 kb on - strand at 633.093 kb on - strand at 633.119 kb on - strand at 633.210 kb on + strand, within DVU0568 at 633.251 kb on - strand, within DVU0568 at 633.326 kb on + strand, within DVU0568 at 633.326 kb on + strand, within DVU0568 at 633.334 kb on - strand, within DVU0568 at 633.462 kb on - strand, within DVU0568 at 633.482 kb on - strand, within DVU0568 at 633.510 kb on - strand, within DVU0568 at 633.510 kb on - strand, within DVU0568 at 633.530 kb on + strand, within DVU0568 at 633.535 kb on + strand, within DVU0568 at 633.538 kb on - strand, within DVU0568 at 633.543 kb on - strand, within DVU0568 at 633.548 kb on - strand, within DVU0568 at 633.584 kb on + strand, within DVU0568 at 633.697 kb on + strand, within DVU0568 at 633.762 kb on - strand, within DVU0568 at 633.772 kb on + strand, within DVU0568 at 633.780 kb on - strand, within DVU0568 at 633.790 kb on + strand, within DVU0568 at 633.798 kb on - strand, within DVU0568 at 633.858 kb on - strand, within DVU0568 at 633.863 kb on - strand, within DVU0568 at 633.863 kb on - strand, within DVU0568 at 633.907 kb on + strand, within DVU0568 at 633.907 kb on + strand, within DVU0568 at 633.915 kb on - strand, within DVU0568 at 633.919 kb on + strand, within DVU0568 at 633.935 kb on + strand, within DVU0568 at 633.994 kb on - strand, within DVU0568 at 633.996 kb on - strand, within DVU0568 at 634.080 kb on + strand at 634.110 kb on + strand at 634.149 kb on + strand at 634.177 kb on + strand at 634.184 kb on + strand at 634.211 kb on - strand at 634.211 kb on - strand at 634.305 kb on - strand at 634.425 kb on + strand at 634.452 kb on - strand at 634.563 kb on + strand at 634.563 kb on - strand at 634.600 kb on + strand, within flrA at 634.615 kb on - strand, within flrA at 634.637 kb on + strand, within flrA at 634.637 kb on + strand, within flrA at 634.645 kb on - strand, within flrA at 634.645 kb on - strand, within flrA at 634.645 kb on - strand, within flrA at 634.645 kb on - strand, within flrA at 634.671 kb on + strand, within flrA at 634.763 kb on + strand, within flrA at 634.771 kb on - strand, within flrA at 634.771 kb on - strand, within flrA at 634.793 kb on - strand, within flrA at 634.813 kb on + strand, within flrA at 634.832 kb on - strand, within flrA at 634.946 kb on - strand, within flrA at 635.049 kb on + strand, within flrA at 635.053 kb on + strand, within flrA
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with limited (C) D,L-Lactate (7mM) remove 632,105 - DVU0567 0.19 -0.1 632,110 - DVU0567 0.20 -0.5 632,190 + DVU0567 0.27 -0.7 632,255 + DVU0567 0.33 -0.4 632,255 + DVU0567 0.33 +0.4 632,263 - DVU0567 0.34 +0.6 632,295 - DVU0567 0.37 -0.3 632,382 - DVU0567 0.45 -0.0 632,393 + DVU0567 0.46 +0.5 632,406 + DVU0567 0.47 +0.6 632,453 + DVU0567 0.52 +0.1 632,634 + DVU0567 0.68 +0.2 632,642 - DVU0567 0.69 +0.0 632,642 - DVU0567 0.69 +0.2 632,694 + DVU0567 0.74 +0.3 632,765 + DVU0567 0.81 -1.3 632,776 + DVU0567 0.82 +0.0 632,791 + DVU0567 0.83 +0.7 632,902 + +0.1 633,062 - -0.1 633,085 - -1.2 633,093 - +0.3 633,119 - +0.0 633,210 + DVU0568 0.11 +0.0 633,251 - DVU0568 0.15 -0.5 633,326 + DVU0568 0.22 -1.2 633,326 + DVU0568 0.22 -0.2 633,334 - DVU0568 0.23 +0.0 633,462 - DVU0568 0.35 +0.2 633,482 - DVU0568 0.37 +0.3 633,510 - DVU0568 0.40 +0.6 633,510 - DVU0568 0.40 -0.2 633,530 + DVU0568 0.42 +1.3 633,535 + DVU0568 0.42 +0.3 633,538 - DVU0568 0.42 +0.0 633,543 - DVU0568 0.43 +0.1 633,548 - DVU0568 0.43 +0.3 633,584 + DVU0568 0.47 +0.1 633,697 + DVU0568 0.58 +0.4 633,762 - DVU0568 0.64 +0.1 633,772 + DVU0568 0.65 -0.8 633,780 - DVU0568 0.66 +0.5 633,790 + DVU0568 0.67 +0.3 633,798 - DVU0568 0.67 -0.3 633,858 - DVU0568 0.73 +0.2 633,863 - DVU0568 0.74 +0.2 633,863 - DVU0568 0.74 -1.1 633,907 + DVU0568 0.78 +0.2 633,907 + DVU0568 0.78 +0.0 633,915 - DVU0568 0.79 +0.2 633,919 + DVU0568 0.79 -0.1 633,935 + DVU0568 0.81 +0.5 633,994 - DVU0568 0.86 -0.1 633,996 - DVU0568 0.86 +0.3 634,080 + +0.4 634,110 + +1.1 634,149 + -1.6 634,177 + +1.1 634,184 + -0.1 634,211 - +0.3 634,211 - +0.0 634,305 - +0.2 634,425 + +0.5 634,452 - +0.0 634,563 + +2.6 634,563 - -0.3 634,600 + flrA DVU0569 0.12 -1.5 634,615 - flrA DVU0569 0.13 +1.2 634,637 + flrA DVU0569 0.14 +0.5 634,637 + flrA DVU0569 0.14 +0.4 634,645 - flrA DVU0569 0.15 +0.2 634,645 - flrA DVU0569 0.15 +0.4 634,645 - flrA DVU0569 0.15 -0.3 634,645 - flrA DVU0569 0.15 +0.3 634,671 + flrA DVU0569 0.16 -0.5 634,763 + flrA DVU0569 0.22 +0.1 634,771 - flrA DVU0569 0.23 -0.5 634,771 - flrA DVU0569 0.23 +0.3 634,793 - flrA DVU0569 0.24 +0.1 634,813 + flrA DVU0569 0.25 -0.1 634,832 - flrA DVU0569 0.26 +0.4 634,946 - flrA DVU0569 0.34 +0.2 635,049 + flrA DVU0569 0.40 +0.2 635,053 + flrA DVU0569 0.40 +0.3
Or see this region's nucleotide sequence