Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2806

Experiment: MoLS4 with limited (C) D,L-Lactate (7mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2805 and DVU2806 overlap by 14 nucleotidesDVU2806 and DVU2807 are separated by 19 nucleotidesDVU2807 and DVU2808 overlap by 4 nucleotides DVU2805: DVU2805 - cobalamin synthesis protein/P47K family (TIGR), at 2,908,544 to 2,910,490 DVU2805 DVU2806: DVU2806 - MotA/TolQ/ExbB proton channel family protein (TIGR), at 2,910,477 to 2,911,226 DVU2806 DVU2807: DVU2807 - biopolymer transport protein, ExbD/TolR family (TIGR), at 2,911,246 to 2,911,656 DVU2807 DVU2808: DVU2808 - TonB domain protein (TIGR), at 2,911,653 to 2,912,162 DVU2808 Position (kb) 2910 2911 2912Strain fitness (log2 ratio) -2 -1 0 1 2at 2909.594 kb on - strand, within DVU2805at 2909.642 kb on - strand, within DVU2805at 2909.681 kb on - strand, within DVU2805at 2909.718 kb on + strand, within DVU2805at 2909.736 kb on - strand, within DVU2805at 2909.753 kb on + strand, within DVU2805at 2909.761 kb on - strand, within DVU2805at 2909.817 kb on + strand, within DVU2805at 2909.819 kb on + strand, within DVU2805at 2909.841 kb on + strand, within DVU2805at 2909.849 kb on - strand, within DVU2805at 2909.984 kb on - strand, within DVU2805at 2910.030 kb on - strand, within DVU2805at 2910.057 kb on + strand, within DVU2805at 2910.076 kb on + strand, within DVU2805at 2910.106 kb on - strand, within DVU2805at 2910.132 kb on - strand, within DVU2805at 2910.327 kb on + strandat 2910.365 kb on - strandat 2910.484 kb on + strandat 2910.506 kb on + strandat 2910.514 kb on - strandat 2910.514 kb on - strandat 2910.531 kb on + strandat 2910.622 kb on - strand, within DVU2806at 2910.622 kb on - strand, within DVU2806at 2910.622 kb on - strand, within DVU2806at 2910.622 kb on - strand, within DVU2806at 2910.622 kb on - strand, within DVU2806at 2910.645 kb on + strand, within DVU2806at 2910.704 kb on + strand, within DVU2806at 2910.770 kb on - strand, within DVU2806at 2910.784 kb on + strand, within DVU2806at 2910.799 kb on + strand, within DVU2806at 2910.802 kb on - strand, within DVU2806at 2910.855 kb on + strand, within DVU2806at 2910.981 kb on + strand, within DVU2806at 2911.046 kb on + strand, within DVU2806at 2911.115 kb on - strand, within DVU2806at 2911.208 kb on - strandat 2911.281 kb on - strandat 2911.290 kb on - strand, within DVU2807at 2911.322 kb on + strand, within DVU2807at 2911.374 kb on + strand, within DVU2807at 2911.397 kb on - strand, within DVU2807at 2911.474 kb on - strand, within DVU2807at 2911.484 kb on - strand, within DVU2807at 2911.562 kb on - strand, within DVU2807at 2911.578 kb on + strand, within DVU2807at 2911.826 kb on - strand, within DVU2808at 2911.945 kb on + strand, within DVU2808at 2911.970 kb on + strand, within DVU2808at 2912.093 kb on - strand, within DVU2808at 2912.093 kb on - strand, within DVU2808at 2912.183 kb on + strandat 2912.191 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with limited (C) D,L-Lactate (7mM)
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2,909,594 - DVU2805 0.54 -0.1
2,909,642 - DVU2805 0.56 +0.2
2,909,681 - DVU2805 0.58 -0.3
2,909,718 + DVU2805 0.60 -0.2
2,909,736 - DVU2805 0.61 +0.1
2,909,753 + DVU2805 0.62 +1.9
2,909,761 - DVU2805 0.63 +0.2
2,909,817 + DVU2805 0.65 -0.4
2,909,819 + DVU2805 0.65 +0.8
2,909,841 + DVU2805 0.67 -0.2
2,909,849 - DVU2805 0.67 +0.2
2,909,984 - DVU2805 0.74 -0.8
2,910,030 - DVU2805 0.76 -0.0
2,910,057 + DVU2805 0.78 -0.1
2,910,076 + DVU2805 0.79 -0.2
2,910,106 - DVU2805 0.80 -0.4
2,910,132 - DVU2805 0.82 -0.0
2,910,327 + -1.2
2,910,365 - +0.3
2,910,484 + -0.6
2,910,506 + -0.5
2,910,514 - +0.3
2,910,514 - +0.2
2,910,531 + +1.3
2,910,622 - DVU2806 0.19 -0.2
2,910,622 - DVU2806 0.19 -2.6
2,910,622 - DVU2806 0.19 +0.8
2,910,622 - DVU2806 0.19 -0.4
2,910,622 - DVU2806 0.19 +0.0
2,910,645 + DVU2806 0.22 +0.4
2,910,704 + DVU2806 0.30 +0.2
2,910,770 - DVU2806 0.39 -0.2
2,910,784 + DVU2806 0.41 +0.3
2,910,799 + DVU2806 0.43 +0.0
2,910,802 - DVU2806 0.43 -0.4
2,910,855 + DVU2806 0.50 +0.6
2,910,981 + DVU2806 0.67 +0.0
2,911,046 + DVU2806 0.76 -0.2
2,911,115 - DVU2806 0.85 +1.6
2,911,208 - -1.0
2,911,281 - -0.6
2,911,290 - DVU2807 0.11 +0.0
2,911,322 + DVU2807 0.18 -0.2
2,911,374 + DVU2807 0.31 -0.2
2,911,397 - DVU2807 0.37 -0.0
2,911,474 - DVU2807 0.55 +0.4
2,911,484 - DVU2807 0.58 +0.2
2,911,562 - DVU2807 0.77 -0.4
2,911,578 + DVU2807 0.81 -0.5
2,911,826 - DVU2808 0.34 +0.6
2,911,945 + DVU2808 0.57 -0.0
2,911,970 + DVU2808 0.62 +1.0
2,912,093 - DVU2808 0.86 +0.4
2,912,093 - DVU2808 0.86 +0.1
2,912,183 + -0.0
2,912,191 - +0.5

Or see this region's nucleotide sequence