Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1570

Experiment: MoLS4 with limited (C) D,L-Lactate (7mM)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntporA and porB overlap by 4 nucleotidesporB and rho are separated by 454 nucleotides DVU1569: porA - pyruvate ferredoxin oxidoreductase, alpha subunit (TIGR), at 1,650,706 to 1,652,442 porA DVU1570: porB - pyruvate ferredoxin oxidoreductase, beta subunit (TIGR), at 1,652,439 to 1,653,293 porB DVU1571: rho - transcription termination factor Rho (TIGR), at 1,653,748 to 1,654,998 rho Position (kb) 1652 1653 1654Strain fitness (log2 ratio) -2 -1 0 1 2at 1651.490 kb on - strand, within porAat 1651.621 kb on + strand, within porAat 1651.725 kb on - strand, within porAat 1651.737 kb on + strand, within porAat 1652.199 kb on + strand, within porAat 1652.207 kb on - strand, within porAat 1652.207 kb on - strand, within porAat 1652.208 kb on + strand, within porAat 1652.249 kb on + strand, within porAat 1652.253 kb on - strand, within porAat 1652.276 kb on + strandat 1652.483 kb on - strandat 1652.484 kb on - strandat 1652.665 kb on + strand, within porBat 1652.665 kb on + strand, within porBat 1652.671 kb on - strand, within porBat 1652.825 kb on + strand, within porBat 1653.107 kb on - strand, within porBat 1653.164 kb on - strand, within porBat 1653.208 kb on - strandat 1653.433 kb on - strandat 1653.433 kb on - strandat 1653.461 kb on + strandat 1653.470 kb on + strandat 1653.521 kb on + strandat 1653.521 kb on + strandat 1653.529 kb on - strandat 1653.626 kb on + strandat 1653.626 kb on + strandat 1653.979 kb on - strand, within rho

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with limited (C) D,L-Lactate (7mM)
remove
1,651,490 - porA DVU1569 0.45 -0.3
1,651,621 + porA DVU1569 0.53 -0.3
1,651,725 - porA DVU1569 0.59 -0.1
1,651,737 + porA DVU1569 0.59 -0.7
1,652,199 + porA DVU1569 0.86 -0.0
1,652,207 - porA DVU1569 0.86 -0.2
1,652,207 - porA DVU1569 0.86 +0.0
1,652,208 + porA DVU1569 0.86 +0.4
1,652,249 + porA DVU1569 0.89 -2.5
1,652,253 - porA DVU1569 0.89 -0.2
1,652,276 + +0.0
1,652,483 - -1.4
1,652,484 - +0.1
1,652,665 + porB DVU1570 0.26 +0.0
1,652,665 + porB DVU1570 0.26 +0.2
1,652,671 - porB DVU1570 0.27 +1.8
1,652,825 + porB DVU1570 0.45 -0.2
1,653,107 - porB DVU1570 0.78 -0.3
1,653,164 - porB DVU1570 0.85 -0.5
1,653,208 - -0.0
1,653,433 - +0.0
1,653,433 - -0.8
1,653,461 + -0.4
1,653,470 + -1.2
1,653,521 + -0.7
1,653,521 + -0.2
1,653,529 - -1.0
1,653,626 + -0.2
1,653,626 + -0.1
1,653,979 - rho DVU1571 0.18 -0.8

Or see this region's nucleotide sequence