Experiment: MoLS4 with limited (C) D,L-Lactate (7mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1412 and DVU1413 are separated by 113 nucleotides DVU1413 and DVU1414 are separated by 31 nucleotides
DVU1412: DVU1412 - D-isomer specific 2-hydroxyacid dehydrogenase family protein (TIGR), at 1,481,630 to 1,482,610
DVU1412
DVU1413: DVU1413 - conserved hypothetical protein (TIGR), at 1,482,724 to 1,484,016
DVU1413
DVU1414: DVU1414 - sensory box/GGDEF domain/EAL domain protein (TIGR), at 1,484,048 to 1,487,041
DVU1414
Position (kb)
1482
1483
1484
1485 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1481.745 kb on + strand, within DVU1412 at 1481.907 kb on + strand, within DVU1412 at 1481.917 kb on - strand, within DVU1412 at 1481.965 kb on - strand, within DVU1412 at 1481.990 kb on + strand, within DVU1412 at 1482.012 kb on + strand, within DVU1412 at 1482.014 kb on + strand, within DVU1412 at 1482.202 kb on - strand, within DVU1412 at 1482.256 kb on + strand, within DVU1412 at 1482.347 kb on + strand, within DVU1412 at 1482.347 kb on + strand, within DVU1412 at 1482.380 kb on + strand, within DVU1412 at 1482.380 kb on + strand, within DVU1412 at 1482.476 kb on + strand, within DVU1412 at 1482.510 kb on - strand, within DVU1412 at 1482.595 kb on + strand at 1482.715 kb on + strand at 1482.718 kb on - strand at 1482.795 kb on - strand at 1482.848 kb on + strand at 1482.902 kb on - strand, within DVU1413 at 1482.981 kb on - strand, within DVU1413 at 1483.067 kb on - strand, within DVU1413 at 1483.101 kb on - strand, within DVU1413 at 1483.101 kb on - strand, within DVU1413 at 1483.118 kb on - strand, within DVU1413 at 1483.175 kb on + strand, within DVU1413 at 1483.180 kb on + strand, within DVU1413 at 1483.180 kb on + strand, within DVU1413 at 1483.214 kb on + strand, within DVU1413 at 1483.372 kb on + strand, within DVU1413 at 1483.375 kb on - strand, within DVU1413 at 1483.411 kb on + strand, within DVU1413 at 1483.411 kb on + strand, within DVU1413 at 1483.499 kb on + strand, within DVU1413 at 1483.547 kb on + strand, within DVU1413 at 1483.737 kb on - strand, within DVU1413 at 1483.743 kb on + strand, within DVU1413 at 1483.845 kb on + strand, within DVU1413 at 1483.855 kb on - strand, within DVU1413 at 1483.855 kb on - strand, within DVU1413 at 1483.876 kb on - strand, within DVU1413 at 1483.876 kb on - strand, within DVU1413 at 1483.888 kb on - strand at 1483.995 kb on - strand at 1484.033 kb on - strand at 1484.050 kb on + strand at 1484.205 kb on - strand at 1484.224 kb on + strand at 1484.232 kb on + strand at 1484.269 kb on + strand at 1484.277 kb on - strand at 1484.337 kb on + strand at 1484.345 kb on - strand at 1484.435 kb on - strand, within DVU1414 at 1484.453 kb on + strand, within DVU1414 at 1484.461 kb on - strand, within DVU1414 at 1484.461 kb on - strand, within DVU1414 at 1484.463 kb on + strand, within DVU1414 at 1484.494 kb on - strand, within DVU1414 at 1484.532 kb on + strand, within DVU1414 at 1484.586 kb on + strand, within DVU1414 at 1484.645 kb on - strand, within DVU1414 at 1484.800 kb on + strand, within DVU1414 at 1484.800 kb on + strand, within DVU1414 at 1484.800 kb on - strand, within DVU1414 at 1484.822 kb on + strand, within DVU1414 at 1484.825 kb on - strand, within DVU1414 at 1484.830 kb on - strand, within DVU1414 at 1484.830 kb on - strand, within DVU1414 at 1484.830 kb on - strand, within DVU1414 at 1484.830 kb on - strand, within DVU1414 at 1484.876 kb on - strand, within DVU1414 at 1484.931 kb on + strand, within DVU1414 at 1484.931 kb on + strand, within DVU1414 at 1484.931 kb on + strand, within DVU1414 at 1484.939 kb on - strand, within DVU1414 at 1484.939 kb on - strand, within DVU1414
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with limited (C) D,L-Lactate (7mM) remove 1,481,745 + DVU1412 0.12 -0.3 1,481,907 + DVU1412 0.28 -0.3 1,481,917 - DVU1412 0.29 -0.6 1,481,965 - DVU1412 0.34 +0.5 1,481,990 + DVU1412 0.37 -0.2 1,482,012 + DVU1412 0.39 -0.1 1,482,014 + DVU1412 0.39 +0.3 1,482,202 - DVU1412 0.58 -0.1 1,482,256 + DVU1412 0.64 +0.2 1,482,347 + DVU1412 0.73 +0.0 1,482,347 + DVU1412 0.73 -2.0 1,482,380 + DVU1412 0.76 -0.5 1,482,380 + DVU1412 0.76 +0.9 1,482,476 + DVU1412 0.86 -1.5 1,482,510 - DVU1412 0.90 -0.1 1,482,595 + -0.5 1,482,715 + -0.6 1,482,718 - +0.1 1,482,795 - -0.3 1,482,848 + +0.0 1,482,902 - DVU1413 0.14 +0.7 1,482,981 - DVU1413 0.20 +0.2 1,483,067 - DVU1413 0.27 -0.3 1,483,101 - DVU1413 0.29 -0.0 1,483,101 - DVU1413 0.29 -0.0 1,483,118 - DVU1413 0.30 -0.1 1,483,175 + DVU1413 0.35 +0.3 1,483,180 + DVU1413 0.35 -0.6 1,483,180 + DVU1413 0.35 -0.2 1,483,214 + DVU1413 0.38 +0.2 1,483,372 + DVU1413 0.50 -0.3 1,483,375 - DVU1413 0.50 +0.4 1,483,411 + DVU1413 0.53 +0.2 1,483,411 + DVU1413 0.53 +0.6 1,483,499 + DVU1413 0.60 +0.3 1,483,547 + DVU1413 0.64 -0.4 1,483,737 - DVU1413 0.78 +1.8 1,483,743 + DVU1413 0.79 +0.6 1,483,845 + DVU1413 0.87 -0.0 1,483,855 - DVU1413 0.87 +0.2 1,483,855 - DVU1413 0.87 +0.1 1,483,876 - DVU1413 0.89 +0.1 1,483,876 - DVU1413 0.89 -0.2 1,483,888 - -0.2 1,483,995 - -0.2 1,484,033 - +0.0 1,484,050 + +0.3 1,484,205 - +0.3 1,484,224 + -0.3 1,484,232 + -0.4 1,484,269 + +0.5 1,484,277 - -0.1 1,484,337 + +0.1 1,484,345 - -0.0 1,484,435 - DVU1414 0.13 -0.4 1,484,453 + DVU1414 0.14 -0.8 1,484,461 - DVU1414 0.14 -0.1 1,484,461 - DVU1414 0.14 -0.2 1,484,463 + DVU1414 0.14 -0.0 1,484,494 - DVU1414 0.15 +0.0 1,484,532 + DVU1414 0.16 -0.1 1,484,586 + DVU1414 0.18 +0.2 1,484,645 - DVU1414 0.20 +0.1 1,484,800 + DVU1414 0.25 -0.4 1,484,800 + DVU1414 0.25 -0.0 1,484,800 - DVU1414 0.25 +0.2 1,484,822 + DVU1414 0.26 +0.3 1,484,825 - DVU1414 0.26 +0.1 1,484,830 - DVU1414 0.26 -0.8 1,484,830 - DVU1414 0.26 -0.1 1,484,830 - DVU1414 0.26 -0.1 1,484,830 - DVU1414 0.26 +0.1 1,484,876 - DVU1414 0.28 +0.2 1,484,931 + DVU1414 0.29 -0.7 1,484,931 + DVU1414 0.29 +0.1 1,484,931 + DVU1414 0.29 -0.3 1,484,939 - DVU1414 0.30 -0.4 1,484,939 - DVU1414 0.30 -1.9
Or see this region's nucleotide sequence