Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1413

Experiment: MoLS4 with limited (C) D,L-Lactate (7mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1412 and DVU1413 are separated by 113 nucleotidesDVU1413 and DVU1414 are separated by 31 nucleotides DVU1412: DVU1412 - D-isomer specific 2-hydroxyacid dehydrogenase family protein (TIGR), at 1,481,630 to 1,482,610 DVU1412 DVU1413: DVU1413 - conserved hypothetical protein (TIGR), at 1,482,724 to 1,484,016 DVU1413 DVU1414: DVU1414 - sensory box/GGDEF domain/EAL domain protein (TIGR), at 1,484,048 to 1,487,041 DVU1414 Position (kb) 1482 1483 1484 1485Strain fitness (log2 ratio) -2 -1 0 1 2at 1481.745 kb on + strand, within DVU1412at 1481.907 kb on + strand, within DVU1412at 1481.917 kb on - strand, within DVU1412at 1481.965 kb on - strand, within DVU1412at 1481.990 kb on + strand, within DVU1412at 1482.012 kb on + strand, within DVU1412at 1482.014 kb on + strand, within DVU1412at 1482.202 kb on - strand, within DVU1412at 1482.256 kb on + strand, within DVU1412at 1482.347 kb on + strand, within DVU1412at 1482.347 kb on + strand, within DVU1412at 1482.380 kb on + strand, within DVU1412at 1482.380 kb on + strand, within DVU1412at 1482.476 kb on + strand, within DVU1412at 1482.510 kb on - strand, within DVU1412at 1482.595 kb on + strandat 1482.715 kb on + strandat 1482.718 kb on - strandat 1482.795 kb on - strandat 1482.848 kb on + strandat 1482.902 kb on - strand, within DVU1413at 1482.981 kb on - strand, within DVU1413at 1483.067 kb on - strand, within DVU1413at 1483.101 kb on - strand, within DVU1413at 1483.101 kb on - strand, within DVU1413at 1483.118 kb on - strand, within DVU1413at 1483.175 kb on + strand, within DVU1413at 1483.180 kb on + strand, within DVU1413at 1483.180 kb on + strand, within DVU1413at 1483.214 kb on + strand, within DVU1413at 1483.372 kb on + strand, within DVU1413at 1483.375 kb on - strand, within DVU1413at 1483.411 kb on + strand, within DVU1413at 1483.411 kb on + strand, within DVU1413at 1483.499 kb on + strand, within DVU1413at 1483.547 kb on + strand, within DVU1413at 1483.737 kb on - strand, within DVU1413at 1483.743 kb on + strand, within DVU1413at 1483.845 kb on + strand, within DVU1413at 1483.855 kb on - strand, within DVU1413at 1483.855 kb on - strand, within DVU1413at 1483.876 kb on - strand, within DVU1413at 1483.876 kb on - strand, within DVU1413at 1483.888 kb on - strandat 1483.995 kb on - strandat 1484.033 kb on - strandat 1484.050 kb on + strandat 1484.205 kb on - strandat 1484.224 kb on + strandat 1484.232 kb on + strandat 1484.269 kb on + strandat 1484.277 kb on - strandat 1484.337 kb on + strandat 1484.345 kb on - strandat 1484.435 kb on - strand, within DVU1414at 1484.453 kb on + strand, within DVU1414at 1484.461 kb on - strand, within DVU1414at 1484.461 kb on - strand, within DVU1414at 1484.463 kb on + strand, within DVU1414at 1484.494 kb on - strand, within DVU1414at 1484.532 kb on + strand, within DVU1414at 1484.586 kb on + strand, within DVU1414at 1484.645 kb on - strand, within DVU1414at 1484.800 kb on + strand, within DVU1414at 1484.800 kb on + strand, within DVU1414at 1484.800 kb on - strand, within DVU1414at 1484.822 kb on + strand, within DVU1414at 1484.825 kb on - strand, within DVU1414at 1484.830 kb on - strand, within DVU1414at 1484.830 kb on - strand, within DVU1414at 1484.830 kb on - strand, within DVU1414at 1484.830 kb on - strand, within DVU1414at 1484.876 kb on - strand, within DVU1414at 1484.931 kb on + strand, within DVU1414at 1484.931 kb on + strand, within DVU1414at 1484.931 kb on + strand, within DVU1414at 1484.939 kb on - strand, within DVU1414at 1484.939 kb on - strand, within DVU1414

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with limited (C) D,L-Lactate (7mM)
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1,481,745 + DVU1412 0.12 -0.3
1,481,907 + DVU1412 0.28 -0.3
1,481,917 - DVU1412 0.29 -0.6
1,481,965 - DVU1412 0.34 +0.5
1,481,990 + DVU1412 0.37 -0.2
1,482,012 + DVU1412 0.39 -0.1
1,482,014 + DVU1412 0.39 +0.3
1,482,202 - DVU1412 0.58 -0.1
1,482,256 + DVU1412 0.64 +0.2
1,482,347 + DVU1412 0.73 +0.0
1,482,347 + DVU1412 0.73 -2.0
1,482,380 + DVU1412 0.76 -0.5
1,482,380 + DVU1412 0.76 +0.9
1,482,476 + DVU1412 0.86 -1.5
1,482,510 - DVU1412 0.90 -0.1
1,482,595 + -0.5
1,482,715 + -0.6
1,482,718 - +0.1
1,482,795 - -0.3
1,482,848 + +0.0
1,482,902 - DVU1413 0.14 +0.7
1,482,981 - DVU1413 0.20 +0.2
1,483,067 - DVU1413 0.27 -0.3
1,483,101 - DVU1413 0.29 -0.0
1,483,101 - DVU1413 0.29 -0.0
1,483,118 - DVU1413 0.30 -0.1
1,483,175 + DVU1413 0.35 +0.3
1,483,180 + DVU1413 0.35 -0.6
1,483,180 + DVU1413 0.35 -0.2
1,483,214 + DVU1413 0.38 +0.2
1,483,372 + DVU1413 0.50 -0.3
1,483,375 - DVU1413 0.50 +0.4
1,483,411 + DVU1413 0.53 +0.2
1,483,411 + DVU1413 0.53 +0.6
1,483,499 + DVU1413 0.60 +0.3
1,483,547 + DVU1413 0.64 -0.4
1,483,737 - DVU1413 0.78 +1.8
1,483,743 + DVU1413 0.79 +0.6
1,483,845 + DVU1413 0.87 -0.0
1,483,855 - DVU1413 0.87 +0.2
1,483,855 - DVU1413 0.87 +0.1
1,483,876 - DVU1413 0.89 +0.1
1,483,876 - DVU1413 0.89 -0.2
1,483,888 - -0.2
1,483,995 - -0.2
1,484,033 - +0.0
1,484,050 + +0.3
1,484,205 - +0.3
1,484,224 + -0.3
1,484,232 + -0.4
1,484,269 + +0.5
1,484,277 - -0.1
1,484,337 + +0.1
1,484,345 - -0.0
1,484,435 - DVU1414 0.13 -0.4
1,484,453 + DVU1414 0.14 -0.8
1,484,461 - DVU1414 0.14 -0.1
1,484,461 - DVU1414 0.14 -0.2
1,484,463 + DVU1414 0.14 -0.0
1,484,494 - DVU1414 0.15 +0.0
1,484,532 + DVU1414 0.16 -0.1
1,484,586 + DVU1414 0.18 +0.2
1,484,645 - DVU1414 0.20 +0.1
1,484,800 + DVU1414 0.25 -0.4
1,484,800 + DVU1414 0.25 -0.0
1,484,800 - DVU1414 0.25 +0.2
1,484,822 + DVU1414 0.26 +0.3
1,484,825 - DVU1414 0.26 +0.1
1,484,830 - DVU1414 0.26 -0.8
1,484,830 - DVU1414 0.26 -0.1
1,484,830 - DVU1414 0.26 -0.1
1,484,830 - DVU1414 0.26 +0.1
1,484,876 - DVU1414 0.28 +0.2
1,484,931 + DVU1414 0.29 -0.7
1,484,931 + DVU1414 0.29 +0.1
1,484,931 + DVU1414 0.29 -0.3
1,484,939 - DVU1414 0.30 -0.4
1,484,939 - DVU1414 0.30 -1.9

Or see this region's nucleotide sequence