Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0980

Experiment: MoLS4 with limited (C) D,L-Lactate (7mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb1200 and b1199 are separated by 178 nucleotidesb1199 and ptsI are separated by 3 nucleotides DVU0979: b1200 - DAK1 domain protein (TIGR), at 1,074,581 to 1,075,645 b1200 DVU0980: b1199 - DAK2 domain protein (TIGR), at 1,075,824 to 1,076,456 b1199 DVU0981: ptsI - multiphosphoryl transfer protein, putative (TIGR), at 1,076,460 to 1,079,024 ptsI Position (kb) 1075 1076 1077Strain fitness (log2 ratio) -2 -1 0 1at 1074.885 kb on - strand, within b1200at 1074.937 kb on - strand, within b1200at 1074.942 kb on - strand, within b1200at 1074.956 kb on - strand, within b1200at 1075.011 kb on - strand, within b1200at 1075.011 kb on - strand, within b1200at 1075.090 kb on - strand, within b1200at 1075.090 kb on - strand, within b1200at 1075.095 kb on + strand, within b1200at 1075.113 kb on + strand, within b1200at 1075.245 kb on - strand, within b1200at 1075.285 kb on + strand, within b1200at 1075.321 kb on + strand, within b1200at 1075.329 kb on - strand, within b1200at 1075.370 kb on - strand, within b1200at 1075.467 kb on + strand, within b1200at 1075.648 kb on - strandat 1075.654 kb on - strandat 1075.684 kb on - strandat 1075.721 kb on - strandat 1075.794 kb on + strandat 1075.853 kb on - strandat 1076.034 kb on + strand, within b1199at 1076.034 kb on + strand, within b1199at 1076.042 kb on - strand, within b1199at 1076.044 kb on + strand, within b1199at 1076.047 kb on - strand, within b1199at 1076.075 kb on - strand, within b1199at 1076.078 kb on - strand, within b1199at 1076.078 kb on - strand, within b1199at 1076.170 kb on + strand, within b1199at 1076.182 kb on - strand, within b1199at 1076.201 kb on + strand, within b1199at 1076.201 kb on + strand, within b1199at 1076.209 kb on - strand, within b1199at 1076.209 kb on - strand, within b1199at 1076.210 kb on + strand, within b1199at 1076.305 kb on + strand, within b1199at 1076.375 kb on + strand, within b1199at 1076.453 kb on - strandat 1076.493 kb on + strandat 1076.501 kb on - strandat 1076.512 kb on - strandat 1076.540 kb on - strandat 1076.684 kb on - strandat 1076.697 kb on + strandat 1076.697 kb on + strandat 1076.738 kb on + strand, within ptsIat 1076.800 kb on - strand, within ptsIat 1076.804 kb on + strand, within ptsIat 1076.804 kb on + strand, within ptsIat 1076.857 kb on - strand, within ptsIat 1076.918 kb on + strand, within ptsIat 1076.919 kb on - strand, within ptsIat 1076.926 kb on - strand, within ptsIat 1077.014 kb on + strand, within ptsIat 1077.019 kb on + strand, within ptsIat 1077.118 kb on - strand, within ptsIat 1077.171 kb on - strand, within ptsIat 1077.303 kb on + strand, within ptsIat 1077.379 kb on - strand, within ptsIat 1077.437 kb on - strand, within ptsI

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with limited (C) D,L-Lactate (7mM)
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1,074,885 - b1200 DVU0979 0.29 -0.2
1,074,937 - b1200 DVU0979 0.33 +0.1
1,074,942 - b1200 DVU0979 0.34 -0.9
1,074,956 - b1200 DVU0979 0.35 +0.3
1,075,011 - b1200 DVU0979 0.40 -0.0
1,075,011 - b1200 DVU0979 0.40 -0.0
1,075,090 - b1200 DVU0979 0.48 +0.5
1,075,090 - b1200 DVU0979 0.48 -0.0
1,075,095 + b1200 DVU0979 0.48 +0.2
1,075,113 + b1200 DVU0979 0.50 +0.3
1,075,245 - b1200 DVU0979 0.62 +0.2
1,075,285 + b1200 DVU0979 0.66 +0.4
1,075,321 + b1200 DVU0979 0.69 +1.1
1,075,329 - b1200 DVU0979 0.70 -0.3
1,075,370 - b1200 DVU0979 0.74 +0.8
1,075,467 + b1200 DVU0979 0.83 +0.1
1,075,648 - -0.2
1,075,654 - -0.1
1,075,684 - -0.5
1,075,721 - +0.1
1,075,794 + +0.2
1,075,853 - -0.1
1,076,034 + b1199 DVU0980 0.33 +0.0
1,076,034 + b1199 DVU0980 0.33 -0.1
1,076,042 - b1199 DVU0980 0.34 +0.2
1,076,044 + b1199 DVU0980 0.35 +0.1
1,076,047 - b1199 DVU0980 0.35 +0.5
1,076,075 - b1199 DVU0980 0.40 -0.3
1,076,078 - b1199 DVU0980 0.40 -0.6
1,076,078 - b1199 DVU0980 0.40 -0.1
1,076,170 + b1199 DVU0980 0.55 -0.4
1,076,182 - b1199 DVU0980 0.57 +0.1
1,076,201 + b1199 DVU0980 0.60 -0.1
1,076,201 + b1199 DVU0980 0.60 +0.7
1,076,209 - b1199 DVU0980 0.61 +0.6
1,076,209 - b1199 DVU0980 0.61 +0.4
1,076,210 + b1199 DVU0980 0.61 -0.5
1,076,305 + b1199 DVU0980 0.76 -0.5
1,076,375 + b1199 DVU0980 0.87 +0.7
1,076,453 - +0.3
1,076,493 + +0.7
1,076,501 - +0.9
1,076,512 - -0.0
1,076,540 - +0.2
1,076,684 - -0.2
1,076,697 + -0.3
1,076,697 + -0.2
1,076,738 + ptsI DVU0981 0.11 -0.4
1,076,800 - ptsI DVU0981 0.13 -0.2
1,076,804 + ptsI DVU0981 0.13 -0.2
1,076,804 + ptsI DVU0981 0.13 -0.2
1,076,857 - ptsI DVU0981 0.15 +1.3
1,076,918 + ptsI DVU0981 0.18 -0.0
1,076,919 - ptsI DVU0981 0.18 -0.1
1,076,926 - ptsI DVU0981 0.18 -2.0
1,077,014 + ptsI DVU0981 0.22 -0.3
1,077,019 + ptsI DVU0981 0.22 -0.2
1,077,118 - ptsI DVU0981 0.26 +0.3
1,077,171 - ptsI DVU0981 0.28 -0.1
1,077,303 + ptsI DVU0981 0.33 -0.8
1,077,379 - ptsI DVU0981 0.36 +0.0
1,077,437 - ptsI DVU0981 0.38 -0.6

Or see this region's nucleotide sequence