Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2414

Experiment: Rifampicin 0.000625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000625 mg/ml
2,484,725	+	phb	Synpcc7942_2412	0.35	+0.7
2,484,770	+	phb	Synpcc7942_2412	0.41	+2.7
2,485,233	+				+2.0
2,485,241	-				+1.6
2,485,241	-				-1.3
2,485,350	+		Synpcc7942_2413	0.29	-1.7
2,485,378	+		Synpcc7942_2413	0.40	+1.5
2,485,386	-		Synpcc7942_2413	0.43	+1.5
2,485,391	-		Synpcc7942_2413	0.45	-3.4
2,485,407	+		Synpcc7942_2413	0.51	-3.0
2,485,459	-		Synpcc7942_2413	0.72	-2.8
2,485,487	+		Synpcc7942_2413	0.84	-1.9
2,485,507	-				+0.9
2,485,509	+				+1.6
2,485,509	-				+0.1
2,485,579	-				-2.3
2,485,579	-				-1.3
2,485,579	-				-3.3
2,485,584	-				-3.7
2,485,678	+				-2.0
2,485,720	-		Synpcc7942_2414	0.12	-2.0
2,485,730	+		Synpcc7942_2414	0.13	+0.7
2,485,740	-		Synpcc7942_2414	0.14	+0.8
2,485,753	-		Synpcc7942_2414	0.15	-1.3
2,485,798	+		Synpcc7942_2414	0.19	-1.0
2,485,798	+		Synpcc7942_2414	0.19	-0.7
2,485,801	+		Synpcc7942_2414	0.20	+0.0
2,485,903	+		Synpcc7942_2414	0.29	+1.5
2,485,912	+		Synpcc7942_2414	0.30	-2.5
2,485,948	-		Synpcc7942_2414	0.33	+0.5
2,485,982	+		Synpcc7942_2414	0.37	+3.0
2,486,012	+		Synpcc7942_2414	0.39	-2.7
2,486,032	-		Synpcc7942_2414	0.41	-0.0
2,486,033	-		Synpcc7942_2414	0.41	+2.0
2,486,033	-		Synpcc7942_2414	0.41	+4.2
2,486,033	-		Synpcc7942_2414	0.41	-1.3
2,486,033	-		Synpcc7942_2414	0.41	+3.3
2,486,037	+		Synpcc7942_2414	0.42	-1.3
2,486,040	-		Synpcc7942_2414	0.42	-1.7
2,486,042	+		Synpcc7942_2414	0.42	+0.9
2,486,042	+		Synpcc7942_2414	0.42	+0.2
2,486,042	+		Synpcc7942_2414	0.42	+0.1
2,486,045	-		Synpcc7942_2414	0.43	+2.8
2,486,045	-		Synpcc7942_2414	0.43	+0.2
2,486,050	-		Synpcc7942_2414	0.43	+1.5
2,486,069	+		Synpcc7942_2414	0.45	-1.4
2,486,069	+		Synpcc7942_2414	0.45	+0.9
2,486,098	+		Synpcc7942_2414	0.48	-2.0
2,486,129	+		Synpcc7942_2414	0.51	-0.7
2,486,129	+		Synpcc7942_2414	0.51	-2.7
2,486,130	-		Synpcc7942_2414	0.51	+1.9
2,486,137	-		Synpcc7942_2414	0.51	+0.3
2,486,147	-		Synpcc7942_2414	0.52	+1.1
2,486,151	-		Synpcc7942_2414	0.53	-2.3
2,486,151	-		Synpcc7942_2414	0.53	+2.8
2,486,151	-		Synpcc7942_2414	0.53	+1.6
2,486,151	-		Synpcc7942_2414	0.53	+1.1
2,486,151	-		Synpcc7942_2414	0.53	-0.7
2,486,214	+		Synpcc7942_2414	0.59	-0.5
2,486,214	+		Synpcc7942_2414	0.59	-1.7
2,486,224	+		Synpcc7942_2414	0.60	-0.4
2,486,318	+		Synpcc7942_2414	0.68	-2.0
2,486,379	+		Synpcc7942_2414	0.74	-1.3
2,486,387	-		Synpcc7942_2414	0.75	-0.6
2,486,436	+		Synpcc7942_2414	0.80	-0.8
2,486,439	-		Synpcc7942_2414	0.80	-1.0
2,486,452	+		Synpcc7942_2414	0.81	+1.3
2,486,498	+		Synpcc7942_2414	0.86	-0.9
2,486,498	+		Synpcc7942_2414	0.86	+2.3
2,486,528	-		Synpcc7942_2414	0.88	+2.1
2,486,528	-		Synpcc7942_2414	0.88	+0.3
2,486,532	+		Synpcc7942_2414	0.89	+1.8
2,486,532	+		Synpcc7942_2414	0.89	+1.9
2,486,565	+				-1.7
2,486,573	-				-1.7
2,486,586	+				-1.3
2,486,596	+				+0.1
2,486,604	-				+0.3
2,486,606	-				-1.7
2,486,608	+				-2.5
2,486,608	+				-2.3
2,486,608	+				-1.1
2,486,608	+				-1.3
2,486,616	-				+0.3
2,486,624	-				-1.3
2,486,645	+				+0.1
2,486,705	-				-0.0
2,486,705	-				+0.7
2,486,718	+				-1.7
2,486,718	+				+0.6
2,486,726	-				+0.9
2,486,726	-				+2.3
2,486,726	-				+1.2
2,486,731	-				+1.5
2,486,731	-				+0.5
2,486,731	-				-0.1
2,486,793	+				+0.3
2,486,795	-				-0.7
2,486,801	-				+3.4
2,486,808	+				-0.3
2,486,812	+				+1.1
2,486,814	+				+1.6
2,486,814	+				+2.8
2,486,814	+				+1.5
2,486,822	-				-2.3
2,486,822	-				-0.3
2,486,822	-				-0.1
2,486,833	+				-0.3
2,486,841	-				-0.5
2,486,890	-				+1.0