Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2169

Experiment: Rifampicin 0.000625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000625 mg/ml
2,250,770	+	pcrA	Synpcc7942_2168	0.88	-2.0
2,250,821	+	pcrA	Synpcc7942_2168	0.90	-1.4
2,250,829	-				-0.7
2,250,829	-				+1.3
2,250,829	-				-1.2
2,250,855	+				-1.5
2,251,025	+				-2.2
2,251,026	+				-3.5
2,251,062	-				-2.5
2,251,064	-				-1.7
2,251,066	+				+2.8
2,251,067	-				-0.5
2,251,106	-				-2.2
2,251,113	+				+0.3
2,251,113	+				+1.2
2,251,113	+				+0.8
2,251,121	-				-0.3
2,251,121	-				+0.4
2,251,121	-				-1.7
2,251,121	-				+1.1
2,251,121	-				+0.6
2,251,127	-				+0.2
2,251,154	-				-0.7
2,251,154	-				+0.5
2,251,162	+				-1.0
2,251,166	-				-0.2
2,251,169	+				-0.2
2,251,177	-				+0.5
2,251,177	-				-1.2
2,251,191	+				+2.7
2,251,191	+				+2.0
2,251,191	+				-1.6
2,251,199	-		Synpcc7942_2169	0.12	-0.7
2,251,204	-		Synpcc7942_2169	0.14	+1.6
2,251,206	+		Synpcc7942_2169	0.14	-3.4
2,251,235	+		Synpcc7942_2169	0.23	-2.7
2,251,235	+		Synpcc7942_2169	0.23	+0.0
2,251,235	+		Synpcc7942_2169	0.23	+0.7
2,251,236	-		Synpcc7942_2169	0.23	+0.4
2,251,240	+		Synpcc7942_2169	0.25	-2.7
2,251,240	+		Synpcc7942_2169	0.25	-0.2
2,251,240	+		Synpcc7942_2169	0.25	-3.0
2,251,240	+		Synpcc7942_2169	0.25	+2.4
2,251,245	+		Synpcc7942_2169	0.26	-2.7
2,251,248	-		Synpcc7942_2169	0.27	-0.3
2,251,248	-		Synpcc7942_2169	0.27	+1.0
2,251,248	-		Synpcc7942_2169	0.27	-2.2
2,251,248	-		Synpcc7942_2169	0.27	-0.6
2,251,248	-		Synpcc7942_2169	0.27	+1.5
2,251,248	-		Synpcc7942_2169	0.27	+0.3
2,251,248	-		Synpcc7942_2169	0.27	-0.2
2,251,255	-		Synpcc7942_2169	0.29	+0.1
2,251,255	-		Synpcc7942_2169	0.29	-3.0
2,251,264	+		Synpcc7942_2169	0.32	-1.2
2,251,269	+		Synpcc7942_2169	0.34	+0.3
2,251,269	+		Synpcc7942_2169	0.34	-2.5
2,251,272	-		Synpcc7942_2169	0.35	-0.7
2,251,272	-		Synpcc7942_2169	0.35	-2.5
2,251,312	-		Synpcc7942_2169	0.47	-0.2
2,251,314	+		Synpcc7942_2169	0.48	-0.7
2,251,315	-		Synpcc7942_2169	0.48	+0.6
2,251,322	-		Synpcc7942_2169	0.50	-2.7
2,251,325	+		Synpcc7942_2169	0.51	-3.8
2,251,325	+		Synpcc7942_2169	0.51	+2.9
2,251,325	+		Synpcc7942_2169	0.51	-0.2
2,251,327	-		Synpcc7942_2169	0.52	+0.5
2,251,333	-		Synpcc7942_2169	0.53	-0.1
2,251,333	-		Synpcc7942_2169	0.53	-1.2
2,251,333	-		Synpcc7942_2169	0.53	+0.3
2,251,333	-		Synpcc7942_2169	0.53	+0.7
2,251,346	+		Synpcc7942_2169	0.57	+0.3
2,251,385	+		Synpcc7942_2169	0.69	-1.7
2,251,385	+		Synpcc7942_2169	0.69	-2.7
2,251,393	-		Synpcc7942_2169	0.72	+0.7
2,251,393	-		Synpcc7942_2169	0.72	-0.1
2,251,403	+		Synpcc7942_2169	0.75	-2.5
2,251,412	-		Synpcc7942_2169	0.78	-1.6
2,251,490	-				-1.7
2,251,554	-				-0.7
2,251,580	-				-0.4
2,251,580	-				+0.3
2,251,589	+				+2.1
2,251,596	+	fur2	Synpcc7942_2170	0.11	+0.3
2,251,596	+	fur2	Synpcc7942_2170	0.11	-0.3
2,251,596	+	fur2	Synpcc7942_2170	0.11	-0.1
2,251,596	+	fur2	Synpcc7942_2170	0.11	-1.3
2,251,601	+	fur2	Synpcc7942_2170	0.12	-2.5
2,251,602	-	fur2	Synpcc7942_2170	0.12	+0.2
2,251,604	-	fur2	Synpcc7942_2170	0.12	+1.9
2,251,604	-	fur2	Synpcc7942_2170	0.12	-2.0
2,251,604	-	fur2	Synpcc7942_2170	0.12	-0.7
2,251,619	-	fur2	Synpcc7942_2170	0.16	-0.6
2,251,634	+	fur2	Synpcc7942_2170	0.19	+0.3
2,251,664	+	fur2	Synpcc7942_2170	0.26	-1.7
2,251,664	+	fur2	Synpcc7942_2170	0.26	-1.4
2,251,664	+	fur2	Synpcc7942_2170	0.26	+0.9
2,251,664	+	fur2	Synpcc7942_2170	0.26	-0.7
2,251,664	+	fur2	Synpcc7942_2170	0.26	+0.3
2,251,664	+	fur2	Synpcc7942_2170	0.26	+0.2
2,251,664	+	fur2	Synpcc7942_2170	0.26	-2.0
2,251,664	+	fur2	Synpcc7942_2170	0.26	-1.3
2,251,664	+	fur2	Synpcc7942_2170	0.26	+1.3
2,251,664	+	fur2	Synpcc7942_2170	0.26	+0.8
2,251,664	+	fur2	Synpcc7942_2170	0.26	-0.7
2,251,668	-	fur2	Synpcc7942_2170	0.27	+1.4
2,251,672	-	fur2	Synpcc7942_2170	0.28	-0.7
2,251,672	-	fur2	Synpcc7942_2170	0.28	+1.3
2,251,672	-	fur2	Synpcc7942_2170	0.28	+1.1
2,251,672	-	fur2	Synpcc7942_2170	0.28	-1.4
2,251,672	-	fur2	Synpcc7942_2170	0.28	+0.7
2,251,672	-	fur2	Synpcc7942_2170	0.28	-1.2
2,251,672	-	fur2	Synpcc7942_2170	0.28	-0.7
2,251,672	-	fur2	Synpcc7942_2170	0.28	-0.7
2,251,672	-	fur2	Synpcc7942_2170	0.28	-0.8
2,251,687	+	fur2	Synpcc7942_2170	0.31	+0.5
2,251,724	-	fur2	Synpcc7942_2170	0.39	-0.5
2,251,730	+	fur2	Synpcc7942_2170	0.40	+3.9
2,251,743	+	fur2	Synpcc7942_2170	0.43	+0.5
2,251,751	-	fur2	Synpcc7942_2170	0.45	-1.0
2,251,751	-	fur2	Synpcc7942_2170	0.45	-0.0
2,251,755	+	fur2	Synpcc7942_2170	0.46	+2.1
2,251,757	+	fur2	Synpcc7942_2170	0.46	-1.8
2,251,761	-	fur2	Synpcc7942_2170	0.47	-1.1
2,251,763	-	fur2	Synpcc7942_2170	0.48	-1.3
2,251,766	+	fur2	Synpcc7942_2170	0.48	-0.7
2,251,771	-	fur2	Synpcc7942_2170	0.50	+1.2
2,251,774	-	fur2	Synpcc7942_2170	0.50	+0.3
2,251,774	-	fur2	Synpcc7942_2170	0.50	-0.3
2,251,774	-	fur2	Synpcc7942_2170	0.50	-1.5
2,251,789	+	fur2	Synpcc7942_2170	0.54	+0.8
2,251,789	+	fur2	Synpcc7942_2170	0.54	-1.0
2,251,794	+	fur2	Synpcc7942_2170	0.55	+0.9
2,251,794	+	fur2	Synpcc7942_2170	0.55	-1.7
2,251,794	+	fur2	Synpcc7942_2170	0.55	-2.3
2,251,794	+	fur2	Synpcc7942_2170	0.55	-3.0
2,251,794	+	fur2	Synpcc7942_2170	0.55	-3.7
2,251,794	+	fur2	Synpcc7942_2170	0.55	+1.3
2,251,794	+	fur2	Synpcc7942_2170	0.55	-1.3
2,251,794	+	fur2	Synpcc7942_2170	0.55	+0.3
2,251,794	+	fur2	Synpcc7942_2170	0.55	-1.3
2,251,794	+	fur2	Synpcc7942_2170	0.55	-1.7
2,251,794	+	fur2	Synpcc7942_2170	0.55	-3.1
2,251,795	+	fur2	Synpcc7942_2170	0.55	+0.3
2,251,795	+	fur2	Synpcc7942_2170	0.55	+0.9
2,251,795	+	fur2	Synpcc7942_2170	0.55	-1.7
2,251,797	-	fur2	Synpcc7942_2170	0.55	-0.3
2,251,797	-	fur2	Synpcc7942_2170	0.55	+0.0
2,251,797	-	fur2	Synpcc7942_2170	0.55	-0.7
2,251,801	+	fur2	Synpcc7942_2170	0.56	-0.7
2,251,801	+	fur2	Synpcc7942_2170	0.56	+0.9
2,251,802	-	fur2	Synpcc7942_2170	0.56	+1.7
2,251,802	-	fur2	Synpcc7942_2170	0.56	-2.6
2,251,802	-	fur2	Synpcc7942_2170	0.56	-0.7
2,251,802	-	fur2	Synpcc7942_2170	0.56	+3.1
2,251,802	-	fur2	Synpcc7942_2170	0.56	+0.9
2,251,809	-	fur2	Synpcc7942_2170	0.58	-1.3
2,251,837	+	fur2	Synpcc7942_2170	0.64	-3.0
2,251,837	+	fur2	Synpcc7942_2170	0.64	-0.7
2,251,844	+	fur2	Synpcc7942_2170	0.66	-0.7
2,251,845	-	fur2	Synpcc7942_2170	0.66	-2.7
2,251,847	-	fur2	Synpcc7942_2170	0.66	-2.3
2,251,848	+	fur2	Synpcc7942_2170	0.67	-1.0
2,251,848	+	fur2	Synpcc7942_2170	0.67	+5.5
2,251,848	+	fur2	Synpcc7942_2170	0.67	+0.2
2,251,852	-	fur2	Synpcc7942_2170	0.68	-1.3
2,251,855	+	fur2	Synpcc7942_2170	0.68	-1.3
2,251,856	-	fur2	Synpcc7942_2170	0.68	+2.5
2,251,856	-	fur2	Synpcc7942_2170	0.68	+0.1
2,251,856	-	fur2	Synpcc7942_2170	0.68	+0.3
2,251,906	+	fur2	Synpcc7942_2170	0.80	-2.5
2,251,937	-	fur2	Synpcc7942_2170	0.86	-3.8
2,251,952	-	fur2	Synpcc7942_2170	0.90	-1.7
2,251,959	-				-3.5
2,251,990	+				-2.5
2,252,021	-				-2.0
2,252,106	+				-1.7
2,252,111	+				-3.3
2,252,203	+				-6.1
2,252,222	-				-4.4
2,252,340	+	dpsA	Synpcc7942_2171	0.27	-4.4
2,252,359	+	dpsA	Synpcc7942_2171	0.31	+0.3
2,252,391	+	dpsA	Synpcc7942_2171	0.37	-3.3
2,252,399	-	dpsA	Synpcc7942_2171	0.38	-2.3
2,252,424	+	dpsA	Synpcc7942_2171	0.43	-0.7