Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2108

Experiment: Rifampicin 0.000625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000625 mg/ml
2,187,732	+	cynA	Synpcc7942_2107	0.55	+0.8
2,187,740	-	cynA	Synpcc7942_2107	0.55	-0.4
2,187,740	-	cynA	Synpcc7942_2107	0.55	-0.5
2,187,749	+	cynA	Synpcc7942_2107	0.56	+1.7
2,187,752	-	cynA	Synpcc7942_2107	0.56	-0.3
2,187,903	+	cynA	Synpcc7942_2107	0.65	+0.9
2,187,906	+	cynA	Synpcc7942_2107	0.65	-0.7
2,187,914	-	cynA	Synpcc7942_2107	0.66	+1.5
2,187,937	-	cynA	Synpcc7942_2107	0.67	-2.0
2,187,937	-	cynA	Synpcc7942_2107	0.67	-0.2
2,187,937	-	cynA	Synpcc7942_2107	0.67	-0.7
2,188,015	+	cynA	Synpcc7942_2107	0.72	+1.3
2,188,023	-	cynA	Synpcc7942_2107	0.73	-0.2
2,188,023	-	cynA	Synpcc7942_2107	0.73	+0.8
2,188,034	+	cynA	Synpcc7942_2107	0.74	+2.3
2,188,054	-	cynA	Synpcc7942_2107	0.75	-0.3
2,188,075	-	cynA	Synpcc7942_2107	0.76	-0.1
2,188,075	-	cynA	Synpcc7942_2107	0.76	-0.7
2,188,075	-	cynA	Synpcc7942_2107	0.76	-0.7
2,188,089	+	cynA	Synpcc7942_2107	0.77	+2.9
2,188,177	+	cynA	Synpcc7942_2107	0.83	+0.3
2,188,196	+	cynA	Synpcc7942_2107	0.84	+1.9
2,188,234	+	cynA	Synpcc7942_2107	0.86	-0.7
2,188,260	-	cynA	Synpcc7942_2107	0.88	+4.5
2,188,325	+				-0.5
2,188,340	-				-0.2
2,188,369	+				+0.3
2,188,416	-				+1.5
2,188,426	-				+1.2
2,188,426	-				+1.5
2,188,426	-				-0.5
2,188,438	-				-0.4
2,188,439	+				+2.7
2,188,480	+				+1.3
2,188,487	+				-0.5
2,188,494	-				-2.5
2,188,576	-				-1.7
2,188,585	-				-1.5
2,188,591	+				-0.2
2,188,591	+				+0.8
2,188,591	+				-2.5
2,188,591	+				-1.7
2,188,591	+				+1.3
2,188,591	+				-1.2
2,188,591	+				+1.3
2,188,591	+				+0.6
2,188,591	+				-2.2
2,188,591	+				+0.9
2,188,599	-				-1.2
2,188,599	-				+4.2
2,188,599	-				-2.0
2,188,599	-				+2.3
2,188,599	-				-1.5
2,188,599	-				+1.0
2,188,599	-				+2.3
2,188,599	-				-3.8
2,188,599	-				+0.5
2,188,599	-				+0.5
2,188,599	-				+2.3
2,188,654	-				-2.0
2,188,697	+				-1.1
2,188,703	-				+0.7
2,188,720	-				-0.7
2,188,783	-		Synpcc7942_2108	0.18	-2.2
2,188,788	+		Synpcc7942_2108	0.19	-2.5
2,188,800	+		Synpcc7942_2108	0.22	-1.0
2,188,800	+		Synpcc7942_2108	0.22	-1.7
2,188,800	+		Synpcc7942_2108	0.22	-3.8
2,188,808	-		Synpcc7942_2108	0.24	-0.0
2,188,854	+		Synpcc7942_2108	0.37	-2.8
2,188,854	+		Synpcc7942_2108	0.37	-2.0
2,188,943	+		Synpcc7942_2108	0.61	-1.2
2,188,943	+		Synpcc7942_2108	0.61	-0.5
2,188,951	-		Synpcc7942_2108	0.63	+2.9
2,188,951	-		Synpcc7942_2108	0.63	+1.2
2,188,951	-		Synpcc7942_2108	0.63	+0.8
2,188,951	-		Synpcc7942_2108	0.63	+1.4
2,188,956	-		Synpcc7942_2108	0.64	+2.3
2,188,961	-		Synpcc7942_2108	0.66	-0.0
2,188,968	+		Synpcc7942_2108	0.68	+1.5
2,188,969	+		Synpcc7942_2108	0.68	+4.0
2,188,975	+		Synpcc7942_2108	0.70	-3.0
2,188,983	+		Synpcc7942_2108	0.72	-2.7
2,188,985	+		Synpcc7942_2108	0.72	+1.7
2,188,985	+		Synpcc7942_2108	0.72	-0.7
2,188,997	+		Synpcc7942_2108	0.76	-1.8
2,189,005	-		Synpcc7942_2108	0.78	-1.2
2,189,046	+		Synpcc7942_2108	0.89	+2.1
2,189,046	+		Synpcc7942_2108	0.89	-2.0
2,189,046	+		Synpcc7942_2108	0.89	+0.9
2,189,048	-		Synpcc7942_2108	0.89	-0.2
2,189,054	-				+3.6
2,189,054	-				-0.7
2,189,054	-				-1.2
2,189,056	+				+0.1
2,189,064	-				-1.2
2,189,064	-				+0.3
2,189,079	-				-2.0
2,189,081	+				+0.7
2,189,081	+				+0.3
2,189,088	+				-0.9
2,189,089	-				+2.1
2,189,107	-				+1.3
2,189,114	+				+0.0
2,189,122	-				-1.3
2,189,144	+				+0.3
2,189,148	+				-0.3
2,189,152	-				-2.5
2,189,161	+				+2.2
2,189,202	-				-0.3
2,189,222	-				+0.5
2,189,238	+				+0.4
2,189,238	+				+1.0
2,189,240	-				+1.4
2,189,272	+				-0.1
2,189,272	+				-0.7
2,189,285	-				+2.6
2,189,313	-				+0.6
2,189,356	+		Synpcc7942_2109	0.12	-1.0
2,189,361	+		Synpcc7942_2109	0.12	+0.3
2,189,361	+		Synpcc7942_2109	0.12	+1.8
2,189,379	+		Synpcc7942_2109	0.13	+1.3
2,189,398	+		Synpcc7942_2109	0.14	-2.2
2,189,398	+		Synpcc7942_2109	0.14	-1.7
2,189,398	+		Synpcc7942_2109	0.14	+4.7
2,189,406	-		Synpcc7942_2109	0.15	-2.5
2,189,406	-		Synpcc7942_2109	0.15	+0.2
2,189,406	-		Synpcc7942_2109	0.15	+4.0
2,189,421	+		Synpcc7942_2109	0.16	+1.1
2,189,429	-		Synpcc7942_2109	0.16	-0.7
2,189,486	-		Synpcc7942_2109	0.19	+1.8
2,189,493	+		Synpcc7942_2109	0.20	-0.5
2,189,503	+		Synpcc7942_2109	0.20	-2.5
2,189,503	+		Synpcc7942_2109	0.20	+2.3
2,189,503	+		Synpcc7942_2109	0.20	+1.6
2,189,508	+		Synpcc7942_2109	0.21	+0.3
2,189,508	+		Synpcc7942_2109	0.21	-0.6
2,189,511	-		Synpcc7942_2109	0.21	+1.2
2,189,514	-		Synpcc7942_2109	0.21	-0.7
2,189,524	-		Synpcc7942_2109	0.22	-0.0
2,189,526	+		Synpcc7942_2109	0.22	+2.2
2,189,542	+				+0.3
2,189,559	-		Synpcc7942_2109	0.24	-0.7
2,189,638	+		Synpcc7942_2109	0.28	-1.0
2,189,638	-		Synpcc7942_2109	0.28	+1.8
2,189,640	+		Synpcc7942_2109	0.28	+2.4
2,189,646	+		Synpcc7942_2109	0.28	-0.0
2,189,657	-		Synpcc7942_2109	0.29	-0.1
2,189,720	-		Synpcc7942_2109	0.33	-0.5
2,189,735	-		Synpcc7942_2109	0.33	+2.2
2,189,806	-		Synpcc7942_2109	0.37	+0.8
2,189,845	+		Synpcc7942_2109	0.40	-1.8
2,189,851	-		Synpcc7942_2109	0.40	-0.9
2,190,023	-		Synpcc7942_2109	0.50	-0.2
2,190,046	-		Synpcc7942_2109	0.51	-1.7
2,190,046	-		Synpcc7942_2109	0.51	-1.2
2,190,054	+		Synpcc7942_2109	0.51	+0.3