Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2041

Experiment: Rifampicin 0.000625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000625 mg/ml
2,109,207	-		Synpcc7942_2039	0.84	-0.7
2,109,233	+		Synpcc7942_2039	0.87	-1.3
2,109,302	-				+0.9
2,109,302	-				-0.0
2,109,302	-				+0.3
2,109,307	+				+0.8
2,109,307	+				-0.1
2,109,310	-				+1.1
2,109,315	-				+1.9
2,109,316	+				+1.4
2,109,334	+				-1.3
2,109,342	-				+1.3
2,109,364	+				+0.5
2,109,369	+				+3.7
2,109,377	-				+1.8
2,109,437	+				+0.8
2,109,461	+				+0.3
2,109,461	+				+1.1
2,109,469	-				+0.7
2,109,469	-				+1.9
2,109,469	-				+1.3
2,109,469	-				-0.7
2,109,469	-				+0.3
2,109,469	-				+1.6
2,109,471	+				+2.1
2,109,471	+				+2.5
2,109,494	+	sfsA	Synpcc7942_2040	0.10	-0.8
2,109,502	-	sfsA	Synpcc7942_2040	0.11	+0.9
2,109,525	-	sfsA	Synpcc7942_2040	0.14	-0.2
2,109,545	-	sfsA	Synpcc7942_2040	0.17	+1.7
2,109,560	-	sfsA	Synpcc7942_2040	0.19	+1.0
2,109,571	+	sfsA	Synpcc7942_2040	0.21	-0.6
2,109,577	-	sfsA	Synpcc7942_2040	0.22	-0.3
2,109,597	+	sfsA	Synpcc7942_2040	0.24	-2.3
2,109,597	+	sfsA	Synpcc7942_2040	0.24	+1.3
2,109,597	+	sfsA	Synpcc7942_2040	0.24	+2.3
2,109,602	-	sfsA	Synpcc7942_2040	0.25	-0.5
2,109,625	+	sfsA	Synpcc7942_2040	0.28	+0.6
2,109,797	-	sfsA	Synpcc7942_2040	0.53	+1.7
2,109,797	-	sfsA	Synpcc7942_2040	0.53	-2.3
2,109,800	+	sfsA	Synpcc7942_2040	0.53	-1.3
2,109,802	-	sfsA	Synpcc7942_2040	0.53	+0.6
2,109,810	+	sfsA	Synpcc7942_2040	0.54	-1.9
2,109,810	+	sfsA	Synpcc7942_2040	0.54	+2.0
2,109,831	-	sfsA	Synpcc7942_2040	0.57	+0.1
2,109,843	+	sfsA	Synpcc7942_2040	0.59	-0.1
2,109,843	+	sfsA	Synpcc7942_2040	0.59	-2.5
2,109,843	+	sfsA	Synpcc7942_2040	0.59	-0.0
2,109,881	-	sfsA	Synpcc7942_2040	0.64	+2.0
2,109,886	-	sfsA	Synpcc7942_2040	0.65	-0.7
2,109,886	-	sfsA	Synpcc7942_2040	0.65	-1.9
2,110,044	+	sfsA	Synpcc7942_2040	0.87	+0.5
2,110,052	-	sfsA	Synpcc7942_2040	0.88	-0.4
2,110,077	+				-1.7
2,110,095	+				-0.1
2,110,114	+				+1.0
2,110,114	+				-4.0
2,110,114	+				+0.6
2,110,114	+				+0.0
2,110,114	+				-0.7
2,110,114	+				-3.0
2,110,115	-				+2.2
2,110,121	-				-0.9
2,110,122	-				-1.3
2,110,122	-				+0.7
2,110,122	-				-1.3
2,110,129	+				-0.7
2,110,137	-				+0.3
2,110,140	+				+1.1
2,110,150	+				+1.6
2,110,171	+				+0.1
2,111,797	+				-2.3
2,111,797	+				+0.4
2,111,797	+				+0.9
2,111,797	+				+0.1
2,111,802	+				+0.2
2,111,805	-				-1.8
2,111,805	-				+0.7
2,111,805	-				-0.3
2,111,805	-				+1.2
2,111,805	-				+0.5
2,111,805	-				+1.9
2,111,805	-				+1.2
2,111,805	-				+0.4
2,111,805	-				+0.7
2,111,807	+				+2.2
2,111,810	-				-3.1
2,111,820	+				-2.7
2,111,828	-				-0.6
2,111,830	+				-1.6
2,111,835	-				-3.7
2,111,888	-		Synpcc7942_2042	0.24	-2.3
2,111,931	-		Synpcc7942_2042	0.37	-0.4
2,111,947	+		Synpcc7942_2042	0.42	-2.7
2,111,947	+		Synpcc7942_2042	0.42	-0.0
2,112,005	+		Synpcc7942_2042	0.60	-3.8
2,112,014	+		Synpcc7942_2042	0.62	-0.3
2,112,017	+		Synpcc7942_2042	0.63	-2.8
2,112,024	+		Synpcc7942_2042	0.65	+3.2
2,112,024	+		Synpcc7942_2042	0.65	+0.7
2,112,024	+		Synpcc7942_2042	0.65	-2.3
2,112,030	+		Synpcc7942_2042	0.67	-1.9
2,112,030	+		Synpcc7942_2042	0.67	+1.5
2,112,030	+		Synpcc7942_2042	0.67	-3.8
2,112,030	+		Synpcc7942_2042	0.67	-0.3
2,112,030	+		Synpcc7942_2042	0.67	-1.9
2,112,031	-		Synpcc7942_2042	0.68	-5.2
2,112,032	-		Synpcc7942_2042	0.68	-2.3
2,112,032	-		Synpcc7942_2042	0.68	-3.8
2,112,038	-		Synpcc7942_2042	0.70	-0.7
2,112,038	-		Synpcc7942_2042	0.70	-2.8
2,112,038	-		Synpcc7942_2042	0.70	-1.4
2,112,038	-		Synpcc7942_2042	0.70	-2.7
2,112,038	-				-1.3
2,112,038	-		Synpcc7942_2042	0.70	+0.6
2,112,050	-		Synpcc7942_2042	0.73	-1.5
2,112,050	-		Synpcc7942_2042	0.73	-2.9
2,112,060	+		Synpcc7942_2042	0.76	-2.6
2,112,068	-		Synpcc7942_2042	0.79	-3.3
2,112,140	+				-2.3
2,112,148	+				-0.0
2,112,192	-				+1.1
2,112,214	-				+1.9
2,112,256	+				-0.4
2,112,295	-	speH	Synpcc7942_2043	0.10	+1.9
2,112,308	-	speH	Synpcc7942_2043	0.13	-2.5
2,112,322	+	speH	Synpcc7942_2043	0.16	-0.2
2,112,338	-	speH	Synpcc7942_2043	0.20	-3.5
2,112,388	+	speH	Synpcc7942_2043	0.32	-2.3
2,112,388	+	speH	Synpcc7942_2043	0.32	+2.3
2,112,388	+	speH	Synpcc7942_2043	0.32	+1.0
2,112,396	-	speH	Synpcc7942_2043	0.34	-0.7
2,112,396	-	speH	Synpcc7942_2043	0.34	-0.4
2,112,460	+	speH	Synpcc7942_2043	0.49	-0.1
2,112,460	+	speH	Synpcc7942_2043	0.49	-0.7
2,112,460	+	speH	Synpcc7942_2043	0.49	+2.3
2,112,468	-	speH	Synpcc7942_2043	0.51	+0.8
2,112,468	-	speH	Synpcc7942_2043	0.51	+0.3
2,112,490	-	speH	Synpcc7942_2043	0.56	+0.9
2,112,561	+	speH	Synpcc7942_2043	0.73	+0.8
2,112,564	-	speH	Synpcc7942_2043	0.74	+4.0
2,112,574	-	speH	Synpcc7942_2043	0.76	-2.3
2,112,577	-	speH	Synpcc7942_2043	0.77	+0.8
2,112,579	-	speH	Synpcc7942_2043	0.78	+2.1
2,112,579	-				+0.9
2,112,613	+	speH	Synpcc7942_2043	0.86	-2.3
2,112,618	+	speH	Synpcc7942_2043	0.87	-0.7
2,112,626	-	speH	Synpcc7942_2043	0.89	+0.3
2,112,626	-	speH	Synpcc7942_2043	0.89	-0.9
2,112,653	+				-2.9
2,112,767	+				+4.9
2,112,770	-				+0.9
2,112,770	-				-0.0
2,112,786	-				-3.6