Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2004

Experiment: Rifampicin 0.000625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000625 mg/ml
2,072,089	+				+0.9
2,072,091	+				+2.4
2,072,095	-				-2.1
2,072,097	-				+0.5
2,072,097	-				-0.5
2,072,099	-				-1.0
2,072,108	+				+3.2
2,072,109	-				+0.3
2,072,109	-				-0.9
2,072,109	-				+0.3
2,072,109	-				+0.1
2,072,109	-				+5.2
2,072,109	-				-0.1
2,072,109	-				-0.7
2,072,109	-				+0.5
2,072,109	-				-0.1
2,072,118	-				-1.9
2,072,118	-				+1.9
2,072,123	+				+1.8
2,072,141	-				+0.4
2,072,157	+				+2.2
2,072,157	+				-0.0
2,072,157	+				+0.5
2,072,157	+				+1.9
2,072,157	+				-1.0
2,072,157	+				-2.5
2,072,157	+				-4.4
2,072,165	-		Synpcc7942_2003	0.10	-1.1
2,072,165	-		Synpcc7942_2003	0.10	-0.9
2,072,165	-		Synpcc7942_2003	0.10	-0.7
2,072,204	-		Synpcc7942_2003	0.16	-0.2
2,072,224	-		Synpcc7942_2003	0.18	-0.7
2,072,241	-		Synpcc7942_2003	0.21	-0.7
2,072,252	+		Synpcc7942_2003	0.22	-2.5
2,072,255	-		Synpcc7942_2003	0.23	+3.0
2,072,271	-		Synpcc7942_2003	0.25	+0.4
2,072,275	+		Synpcc7942_2003	0.25	+3.0
2,072,275	+		Synpcc7942_2003	0.25	-2.3
2,072,280	+		Synpcc7942_2003	0.26	+0.2
2,072,283	-				+2.6
2,072,324	+		Synpcc7942_2003	0.32	+0.3
2,072,326	+		Synpcc7942_2003	0.33	-0.0
2,072,332	-		Synpcc7942_2003	0.33	-0.3
2,072,332	-		Synpcc7942_2003	0.33	+3.3
2,072,332	-		Synpcc7942_2003	0.33	+1.5
2,072,336	+		Synpcc7942_2003	0.34	-3.1
2,072,336	+		Synpcc7942_2003	0.34	+0.4
2,072,336	+		Synpcc7942_2003	0.34	+1.3
2,072,336	+		Synpcc7942_2003	0.34	-0.3
2,072,341	+		Synpcc7942_2003	0.35	+2.0
2,072,343	+		Synpcc7942_2003	0.35	-1.5
2,072,344	-		Synpcc7942_2003	0.35	+0.9
2,072,344	-		Synpcc7942_2003	0.35	+1.7
2,072,371	+		Synpcc7942_2003	0.39	+0.9
2,072,374	-		Synpcc7942_2003	0.39	+0.1
2,072,374	-		Synpcc7942_2003	0.39	+1.0
2,072,379	-		Synpcc7942_2003	0.40	-0.8
2,072,403	+				-1.3
2,072,417	-		Synpcc7942_2003	0.45	-1.1
2,072,417	-		Synpcc7942_2003	0.45	-0.4
2,072,436	-		Synpcc7942_2003	0.48	+2.3
2,072,464	+				+3.6
2,072,467	-		Synpcc7942_2003	0.52	-0.7
2,072,502	+		Synpcc7942_2003	0.57	+0.3
2,072,561	-		Synpcc7942_2003	0.66	+2.8
2,072,577	-		Synpcc7942_2003	0.68	+1.1
2,072,588	-		Synpcc7942_2003	0.69	-2.0
2,072,597	+		Synpcc7942_2003	0.71	-2.0
2,072,610	-		Synpcc7942_2003	0.72	-1.7
2,072,648	+		Synpcc7942_2003	0.78	+1.2
2,072,648	+		Synpcc7942_2003	0.78	+0.3
2,072,648	+		Synpcc7942_2003	0.78	+1.1
2,072,648	+		Synpcc7942_2003	0.78	-0.2
2,072,648	+		Synpcc7942_2003	0.78	+1.8
2,072,648	+		Synpcc7942_2003	0.78	+0.5
2,072,649	+		Synpcc7942_2003	0.78	+1.3
2,072,649	+		Synpcc7942_2003	0.78	-1.7
2,072,649	+		Synpcc7942_2003	0.78	-0.5
2,072,656	-		Synpcc7942_2003	0.79	+2.2
2,072,656	-		Synpcc7942_2003	0.79	-1.4
2,072,657	-		Synpcc7942_2003	0.79	+0.5
2,072,657	-		Synpcc7942_2003	0.79	-0.7
2,072,657	-		Synpcc7942_2003	0.79	-3.3
2,072,657	-		Synpcc7942_2003	0.79	+1.0
2,072,657	-		Synpcc7942_2003	0.79	-0.0
2,072,657	-		Synpcc7942_2003	0.79	+3.7
2,072,657	-		Synpcc7942_2003	0.79	+0.3
2,072,657	-		Synpcc7942_2003	0.79	+0.3
2,072,657	-		Synpcc7942_2003	0.79	+0.9
2,072,657	-		Synpcc7942_2003	0.79	+2.1
2,072,666	-		Synpcc7942_2003	0.80	+0.1
2,072,730	+		Synpcc7942_2003	0.89	+0.2
2,072,732	-		Synpcc7942_2003	0.89	-1.3
2,072,764	-				+0.6
2,072,764	-				+3.4
2,072,777	+				-1.1
2,072,785	-				-0.3
2,072,797	-				-0.1
2,072,844	-				-1.5
2,072,916	-				-3.1
2,072,939	-				-0.5
2,072,975	-				-3.1
2,072,991	+				-0.1
2,073,025	+				-1.6
2,073,025	+				-0.4
2,073,025	+				+0.7
2,073,025	+				+0.4
2,073,033	-				+2.0
2,073,033	-				-0.4
2,073,087	-	sigI	Synpcc7942_2004	0.10	+0.3
2,073,087	-	sigI	Synpcc7942_2004	0.10	+2.0
2,073,108	+	sigI	Synpcc7942_2004	0.14	+2.0
2,073,116	-	sigI	Synpcc7942_2004	0.15	+0.3
2,073,150	+	sigI	Synpcc7942_2004	0.21	-1.7
2,073,150	+	sigI	Synpcc7942_2004	0.21	+1.8
2,073,150	+	sigI	Synpcc7942_2004	0.21	+0.9
2,073,151	+	sigI	Synpcc7942_2004	0.21	+0.5
2,073,158	-	sigI	Synpcc7942_2004	0.22	-0.6
2,073,158	-	sigI	Synpcc7942_2004	0.22	+0.3
2,073,172	+	sigI	Synpcc7942_2004	0.24	-0.6
2,073,180	-	sigI	Synpcc7942_2004	0.26	+2.8
2,073,180	-	sigI	Synpcc7942_2004	0.26	-2.8
2,073,192	-	sigI	Synpcc7942_2004	0.28	-0.7
2,073,243	+	sigI	Synpcc7942_2004	0.36	-0.4
2,073,291	+	sigI	Synpcc7942_2004	0.45	-0.3
2,073,346	+	sigI	Synpcc7942_2004	0.54	+0.3
2,073,347	-	sigI	Synpcc7942_2004	0.54	-0.3
2,073,418	+	sigI	Synpcc7942_2004	0.66	-0.4
2,073,426	-	sigI	Synpcc7942_2004	0.67	+0.3
2,073,433	-	sigI	Synpcc7942_2004	0.69	-0.1
2,073,446	+	sigI	Synpcc7942_2004	0.71	-0.1
2,073,446	+	sigI	Synpcc7942_2004	0.71	-0.3
2,073,446	+	sigI	Synpcc7942_2004	0.71	-1.0
2,073,502	+	sigI	Synpcc7942_2004	0.80	+3.1
2,073,533	+	sigI	Synpcc7942_2004	0.85	+1.7
2,073,541	+	sigI	Synpcc7942_2004	0.87	-0.4
2,073,552	+	sigI	Synpcc7942_2004	0.89	-1.1
2,073,552	+	sigI	Synpcc7942_2004	0.89	-1.9
2,073,584	+				-0.4
2,073,584	+				+0.9
2,073,587	-				+0.4
2,073,592	-				+3.0
2,073,605	-				-1.3
2,073,607	+				-2.5
2,073,668	+				-2.6
2,073,673	+				+1.8
2,073,681	-				+0.2
2,073,682	-				-3.1
2,073,688	-				-1.3
2,073,703	-				-3.0
2,073,713	+		Synpcc7942_2005	0.10	-1.3
2,073,737	+				-0.7
2,073,742	+		Synpcc7942_2005	0.14	+0.3
2,073,745	-		Synpcc7942_2005	0.14	+0.3
2,073,752	-		Synpcc7942_2005	0.15	-0.2
2,073,764	-		Synpcc7942_2005	0.17	-2.3
2,073,821	+		Synpcc7942_2005	0.23	-2.5
2,073,835	+		Synpcc7942_2005	0.25	-1.7
2,073,855	-		Synpcc7942_2005	0.28	-2.7
2,073,858	+		Synpcc7942_2005	0.28	+0.0
2,073,861	-		Synpcc7942_2005	0.28	+1.3
2,073,936	-		Synpcc7942_2005	0.37	+2.1
2,073,939	+		Synpcc7942_2005	0.38	+0.5
2,073,952	+		Synpcc7942_2005	0.39	-1.5
2,073,960	-		Synpcc7942_2005	0.40	+0.1
2,073,960	-		Synpcc7942_2005	0.40	-3.5
2,073,981	-		Synpcc7942_2005	0.43	-2.6
2,074,007	+		Synpcc7942_2005	0.46	-1.0
2,074,014	-		Synpcc7942_2005	0.47	-1.0
2,074,028	+		Synpcc7942_2005	0.49	-0.7
2,074,030	+		Synpcc7942_2005	0.49	-2.1
2,074,051	+		Synpcc7942_2005	0.51	+2.4
2,074,051	+		Synpcc7942_2005	0.51	-0.7
2,074,124	+		Synpcc7942_2005	0.60	+0.6
2,074,124	+		Synpcc7942_2005	0.60	-1.7
2,074,124	+		Synpcc7942_2005	0.60	+2.6
2,074,124	+		Synpcc7942_2005	0.60	+1.7
2,074,124	+		Synpcc7942_2005	0.60	-2.9
2,074,132	-		Synpcc7942_2005	0.61	-0.4
2,074,132	-		Synpcc7942_2005	0.61	-2.3
2,074,132	-		Synpcc7942_2005	0.61	-1.3
2,074,138	+		Synpcc7942_2005	0.62	+1.9
2,074,206	-		Synpcc7942_2005	0.70	-3.0
2,074,224	+		Synpcc7942_2005	0.73	+2.6
2,074,232	-		Synpcc7942_2005	0.73	-1.7
2,074,279	+		Synpcc7942_2005	0.79	+1.4
2,074,316	+		Synpcc7942_2005	0.84	+2.2
2,074,334	-		Synpcc7942_2005	0.86	-0.9
2,074,339	-		Synpcc7942_2005	0.86	-2.3
2,074,373	-				+0.0
2,074,406	+				+4.1
2,074,451	-				+1.0
2,074,460	-				+0.1
2,074,470	-				-0.8
2,074,470	-				+3.3
2,074,482	+				-2.0
2,074,501	+				+2.0
2,074,501	+				+0.1
2,074,509	-				+1.3
2,074,509	-				+1.8
2,074,509	-				-2.0
2,074,509	-				+0.3
2,074,536	-				+0.3
2,074,538	+				+0.3
2,074,548	+				-0.6
2,074,548	+				-0.2
2,074,548	+				+0.5
2,074,548	+				-2.0
2,074,548	+				+1.9
2,074,550	+				-2.3
2,074,556	-				+1.7
2,074,556	-				-0.8
2,074,556	-				+1.3
2,074,575	-				-1.3