Experiment: Rifampicin 0.000625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1723 and Synpcc7942_1724 are separated by 45 nucleotides Synpcc7942_1724 and Synpcc7942_1725 are separated by 229 nucleotides Synpcc7942_1725 and lspA are separated by 51 nucleotides lspA and Synpcc7942_1727 are separated by 27 nucleotides
Synpcc7942_1723: Synpcc7942_1723 - carotene isomerase, at 1,795,482 to 1,797,032
_1723
Synpcc7942_1724: Synpcc7942_1724 - hypothetical protein, at 1,797,078 to 1,797,386
_1724
Synpcc7942_1725: Synpcc7942_1725 - transcriptional regulator, GntR family, at 1,797,616 to 1,799,067
_1725
Synpcc7942_1726: lspA - lipoprotein signal peptidase, at 1,799,119 to 1,799,610
lspA
Synpcc7942_1727: Synpcc7942_1727 - BioY protein, at 1,799,638 to 1,800,219
_1727
Position (kb)
1797
1798
1799
1800 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1796.619 kb on + strand, within Synpcc7942_1723 at 1796.622 kb on - strand, within Synpcc7942_1723 at 1796.627 kb on - strand, within Synpcc7942_1723 at 1796.629 kb on + strand, within Synpcc7942_1723 at 1796.629 kb on + strand, within Synpcc7942_1723 at 1796.629 kb on + strand, within Synpcc7942_1723 at 1796.629 kb on + strand, within Synpcc7942_1723 at 1796.629 kb on + strand, within Synpcc7942_1723 at 1796.629 kb on + strand, within Synpcc7942_1723 at 1796.629 kb on + strand, within Synpcc7942_1723 at 1796.637 kb on - strand, within Synpcc7942_1723 at 1796.637 kb on - strand, within Synpcc7942_1723 at 1796.637 kb on - strand, within Synpcc7942_1723 at 1796.637 kb on - strand, within Synpcc7942_1723 at 1796.637 kb on - strand, within Synpcc7942_1723 at 1796.637 kb on - strand, within Synpcc7942_1723 at 1796.648 kb on + strand, within Synpcc7942_1723 at 1796.656 kb on - strand, within Synpcc7942_1723 at 1796.660 kb on + strand, within Synpcc7942_1723 at 1796.686 kb on - strand, within Synpcc7942_1723 at 1796.724 kb on - strand, within Synpcc7942_1723 at 1796.733 kb on + strand, within Synpcc7942_1723 at 1796.742 kb on - strand, within Synpcc7942_1723 at 1796.742 kb on - strand, within Synpcc7942_1723 at 1796.742 kb on - strand, within Synpcc7942_1723 at 1796.749 kb on + strand, within Synpcc7942_1723 at 1796.749 kb on + strand, within Synpcc7942_1723 at 1796.757 kb on - strand, within Synpcc7942_1723 at 1796.757 kb on - strand, within Synpcc7942_1723 at 1796.862 kb on + strand, within Synpcc7942_1723 at 1796.870 kb on - strand, within Synpcc7942_1723 at 1796.870 kb on - strand, within Synpcc7942_1723 at 1796.884 kb on + strand at 1796.927 kb on + strand at 1796.929 kb on + strand at 1796.937 kb on - strand at 1797.008 kb on + strand at 1797.016 kb on - strand at 1797.043 kb on + strand at 1797.073 kb on - strand at 1797.097 kb on - strand at 1797.097 kb on - strand at 1797.097 kb on - strand at 1797.097 kb on - strand at 1797.110 kb on - strand, within Synpcc7942_1724 at 1797.152 kb on - strand, within Synpcc7942_1724 at 1797.168 kb on - strand, within Synpcc7942_1724 at 1797.168 kb on - strand, within Synpcc7942_1724 at 1797.198 kb on - strand, within Synpcc7942_1724 at 1797.258 kb on + strand, within Synpcc7942_1724 at 1797.502 kb on + strand at 1797.508 kb on - strand at 1797.549 kb on - strand at 1797.559 kb on + strand at 1797.715 kb on + strand at 1797.751 kb on - strand at 1797.767 kb on + strand, within Synpcc7942_1725 at 1797.785 kb on - strand, within Synpcc7942_1725 at 1797.785 kb on - strand, within Synpcc7942_1725 at 1797.785 kb on - strand at 1797.816 kb on - strand, within Synpcc7942_1725 at 1797.822 kb on - strand, within Synpcc7942_1725 at 1797.832 kb on - strand, within Synpcc7942_1725 at 1797.881 kb on + strand, within Synpcc7942_1725 at 1797.881 kb on + strand, within Synpcc7942_1725 at 1797.881 kb on + strand, within Synpcc7942_1725 at 1797.911 kb on - strand, within Synpcc7942_1725 at 1797.970 kb on + strand, within Synpcc7942_1725 at 1797.992 kb on + strand, within Synpcc7942_1725 at 1797.997 kb on + strand, within Synpcc7942_1725 at 1797.997 kb on + strand, within Synpcc7942_1725 at 1798.005 kb on - strand, within Synpcc7942_1725 at 1798.042 kb on - strand, within Synpcc7942_1725 at 1798.063 kb on + strand, within Synpcc7942_1725 at 1798.081 kb on + strand, within Synpcc7942_1725 at 1798.081 kb on + strand, within Synpcc7942_1725 at 1798.089 kb on - strand, within Synpcc7942_1725 at 1798.089 kb on - strand, within Synpcc7942_1725 at 1798.089 kb on - strand, within Synpcc7942_1725 at 1798.089 kb on - strand, within Synpcc7942_1725 at 1798.104 kb on - strand, within Synpcc7942_1725 at 1798.118 kb on + strand, within Synpcc7942_1725 at 1798.219 kb on - strand, within Synpcc7942_1725 at 1798.234 kb on - strand at 1798.257 kb on + strand, within Synpcc7942_1725 at 1798.273 kb on + strand, within Synpcc7942_1725 at 1798.281 kb on - strand, within Synpcc7942_1725 at 1798.302 kb on - strand, within Synpcc7942_1725 at 1798.302 kb on - strand, within Synpcc7942_1725 at 1798.302 kb on - strand, within Synpcc7942_1725 at 1798.302 kb on - strand, within Synpcc7942_1725 at 1798.418 kb on + strand, within Synpcc7942_1725 at 1798.524 kb on + strand, within Synpcc7942_1725 at 1798.554 kb on - strand, within Synpcc7942_1725 at 1798.561 kb on + strand, within Synpcc7942_1725 at 1798.569 kb on - strand, within Synpcc7942_1725 at 1798.595 kb on + strand, within Synpcc7942_1725 at 1798.595 kb on + strand, within Synpcc7942_1725 at 1798.601 kb on + strand, within Synpcc7942_1725 at 1798.606 kb on + strand, within Synpcc7942_1725 at 1798.609 kb on - strand, within Synpcc7942_1725 at 1798.614 kb on - strand, within Synpcc7942_1725 at 1798.631 kb on + strand, within Synpcc7942_1725 at 1798.646 kb on - strand, within Synpcc7942_1725 at 1798.669 kb on + strand, within Synpcc7942_1725 at 1798.676 kb on - strand, within Synpcc7942_1725 at 1798.706 kb on + strand, within Synpcc7942_1725 at 1798.767 kb on - strand, within Synpcc7942_1725 at 1798.781 kb on + strand, within Synpcc7942_1725 at 1798.832 kb on - strand, within Synpcc7942_1725 at 1798.841 kb on - strand, within Synpcc7942_1725 at 1798.841 kb on - strand, within Synpcc7942_1725 at 1798.844 kb on + strand, within Synpcc7942_1725 at 1798.844 kb on + strand, within Synpcc7942_1725 at 1798.844 kb on + strand, within Synpcc7942_1725 at 1798.867 kb on + strand, within Synpcc7942_1725 at 1798.883 kb on + strand, within Synpcc7942_1725 at 1798.883 kb on + strand, within Synpcc7942_1725 at 1798.901 kb on - strand, within Synpcc7942_1725 at 1798.982 kb on + strand at 1798.982 kb on + strand at 1798.992 kb on + strand at 1799.027 kb on + strand at 1799.055 kb on - strand at 1799.161 kb on - strand at 1799.619 kb on + strand at 1799.622 kb on + strand at 1799.622 kb on - strand at 1799.630 kb on - strand at 1799.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000625 mg/ml remove 1,796,619 + Synpcc7942_1723 0.73 -1.5 1,796,622 - Synpcc7942_1723 0.74 +1.8 1,796,627 - Synpcc7942_1723 0.74 -0.8 1,796,629 + Synpcc7942_1723 0.74 +1.8 1,796,629 + Synpcc7942_1723 0.74 -1.5 1,796,629 + Synpcc7942_1723 0.74 -2.6 1,796,629 + Synpcc7942_1723 0.74 -1.4 1,796,629 + Synpcc7942_1723 0.74 -2.4 1,796,629 + Synpcc7942_1723 0.74 -1.4 1,796,629 + Synpcc7942_1723 0.74 +1.4 1,796,637 - Synpcc7942_1723 0.74 +1.0 1,796,637 - Synpcc7942_1723 0.74 +1.8 1,796,637 - Synpcc7942_1723 0.74 +4.4 1,796,637 - Synpcc7942_1723 0.74 +1.1 1,796,637 - Synpcc7942_1723 0.74 +0.5 1,796,637 - Synpcc7942_1723 0.74 +0.9 1,796,648 + Synpcc7942_1723 0.75 -2.8 1,796,656 - Synpcc7942_1723 0.76 +0.2 1,796,660 + Synpcc7942_1723 0.76 -2.4 1,796,686 - Synpcc7942_1723 0.78 -1.0 1,796,724 - Synpcc7942_1723 0.80 +0.8 1,796,733 + Synpcc7942_1723 0.81 +0.5 1,796,742 - Synpcc7942_1723 0.81 -1.6 1,796,742 - Synpcc7942_1723 0.81 +0.0 1,796,742 - Synpcc7942_1723 0.81 +2.9 1,796,749 + Synpcc7942_1723 0.82 +1.1 1,796,749 + Synpcc7942_1723 0.82 -0.0 1,796,757 - Synpcc7942_1723 0.82 -2.4 1,796,757 - Synpcc7942_1723 0.82 +0.1 1,796,862 + Synpcc7942_1723 0.89 -2.4 1,796,870 - Synpcc7942_1723 0.89 +0.8 1,796,870 - Synpcc7942_1723 0.89 -1.4 1,796,884 + -1.9 1,796,927 + +0.7 1,796,929 + +1.2 1,796,937 - +0.2 1,797,008 + -1.0 1,797,016 - +1.4 1,797,043 + -1.2 1,797,073 - +1.4 1,797,097 - +1.5 1,797,097 - +1.5 1,797,097 - -0.4 1,797,097 - +0.7 1,797,110 - Synpcc7942_1724 0.10 -0.8 1,797,152 - Synpcc7942_1724 0.24 +0.6 1,797,168 - Synpcc7942_1724 0.29 -0.8 1,797,168 - Synpcc7942_1724 0.29 -1.4 1,797,198 - Synpcc7942_1724 0.39 -1.8 1,797,258 + Synpcc7942_1724 0.58 +1.0 1,797,502 + +0.1 1,797,508 - -0.1 1,797,549 - -0.5 1,797,559 + +0.9 1,797,715 + -2.8 1,797,751 - +0.9 1,797,767 + Synpcc7942_1725 0.10 +1.5 1,797,785 - Synpcc7942_1725 0.12 +0.8 1,797,785 - Synpcc7942_1725 0.12 +0.7 1,797,785 - -0.4 1,797,816 - Synpcc7942_1725 0.14 -0.8 1,797,822 - Synpcc7942_1725 0.14 +1.6 1,797,832 - Synpcc7942_1725 0.15 -0.1 1,797,881 + Synpcc7942_1725 0.18 +0.2 1,797,881 + Synpcc7942_1725 0.18 +0.6 1,797,881 + Synpcc7942_1725 0.18 +1.0 1,797,911 - Synpcc7942_1725 0.20 +2.1 1,797,970 + Synpcc7942_1725 0.24 +1.2 1,797,992 + Synpcc7942_1725 0.26 +1.1 1,797,997 + Synpcc7942_1725 0.26 +0.6 1,797,997 + Synpcc7942_1725 0.26 +1.9 1,798,005 - Synpcc7942_1725 0.27 -0.8 1,798,042 - Synpcc7942_1725 0.29 +0.2 1,798,063 + Synpcc7942_1725 0.31 +2.3 1,798,081 + Synpcc7942_1725 0.32 +0.2 1,798,081 + Synpcc7942_1725 0.32 +1.0 1,798,089 - Synpcc7942_1725 0.33 +0.7 1,798,089 - Synpcc7942_1725 0.33 +0.8 1,798,089 - Synpcc7942_1725 0.33 +1.5 1,798,089 - Synpcc7942_1725 0.33 +0.2 1,798,104 - Synpcc7942_1725 0.34 -0.9 1,798,118 + Synpcc7942_1725 0.35 +1.6 1,798,219 - Synpcc7942_1725 0.42 +2.0 1,798,234 - +1.8 1,798,257 + Synpcc7942_1725 0.44 -1.0 1,798,273 + Synpcc7942_1725 0.45 +0.2 1,798,281 - Synpcc7942_1725 0.46 +2.0 1,798,302 - Synpcc7942_1725 0.47 -0.4 1,798,302 - Synpcc7942_1725 0.47 -1.4 1,798,302 - Synpcc7942_1725 0.47 +0.5 1,798,302 - Synpcc7942_1725 0.47 +1.2 1,798,418 + Synpcc7942_1725 0.55 -1.4 1,798,524 + Synpcc7942_1725 0.63 -1.5 1,798,554 - Synpcc7942_1725 0.65 +0.2 1,798,561 + Synpcc7942_1725 0.65 -0.5 1,798,569 - Synpcc7942_1725 0.66 +0.2 1,798,595 + Synpcc7942_1725 0.67 -0.8 1,798,595 + Synpcc7942_1725 0.67 +0.6 1,798,601 + Synpcc7942_1725 0.68 -0.5 1,798,606 + Synpcc7942_1725 0.68 -0.2 1,798,609 - Synpcc7942_1725 0.68 -0.4 1,798,614 - Synpcc7942_1725 0.69 +1.0 1,798,631 + Synpcc7942_1725 0.70 +1.3 1,798,646 - Synpcc7942_1725 0.71 +0.2 1,798,669 + Synpcc7942_1725 0.73 -0.1 1,798,676 - Synpcc7942_1725 0.73 -0.8 1,798,706 + Synpcc7942_1725 0.75 +1.0 1,798,767 - Synpcc7942_1725 0.79 -1.1 1,798,781 + Synpcc7942_1725 0.80 +1.8 1,798,832 - Synpcc7942_1725 0.84 +1.7 1,798,841 - Synpcc7942_1725 0.84 +1.6 1,798,841 - Synpcc7942_1725 0.84 +0.6 1,798,844 + Synpcc7942_1725 0.85 +1.1 1,798,844 + Synpcc7942_1725 0.85 +0.6 1,798,844 + Synpcc7942_1725 0.85 -0.7 1,798,867 + Synpcc7942_1725 0.86 -2.4 1,798,883 + Synpcc7942_1725 0.87 +1.8 1,798,883 + Synpcc7942_1725 0.87 -2.8 1,798,901 - Synpcc7942_1725 0.88 -1.5 1,798,982 + -2.2 1,798,982 + -0.4 1,798,992 + -0.5 1,799,027 + -0.8 1,799,055 - -0.6 1,799,161 - -1.4 1,799,619 + -1.8 1,799,622 + +0.3 1,799,622 - +0.4 1,799,630 - +2.4 1,799,630 - +0.2
Or see this region's nucleotide sequence