Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1455

Experiment: Rifampicin 0.000625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntplsX and fabH are separated by 69 nucleotidesfabH and Synpcc7942_1456 are separated by 53 nucleotidesSynpcc7942_1456 and plsC overlap by 32 nucleotides Synpcc7942_1454: plsX - fatty acid/phospholipid synthesis protein, at 1,507,284 to 1,508,324 plsX Synpcc7942_1455: fabH - 3-oxoacyl-(acyl carrier protein) synthase III, at 1,508,394 to 1,509,401 fabH Synpcc7942_1456: Synpcc7942_1456 - malonyl CoA-acyl carrier protein transacylase, at 1,509,455 to 1,510,336 _1456 Synpcc7942_1457: plsC - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 1,510,305 to 1,510,982 plsC Position (kb) 1508 1509 1510Strain fitness (log2 ratio) -1 0 1 2at 1508.279 kb on + strandat 1508.324 kb on + strandat 1508.357 kb on - strandat 1509.395 kb on + strandat 1510.305 kb on + strandat 1510.331 kb on + strandat 1510.362 kb on + strandat 1510.362 kb on + strandat 1510.370 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.000625 mg/ml
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1,508,279 + -0.0
1,508,324 + +0.4
1,508,357 - -0.6
1,509,395 + +1.2
1,510,305 + +2.2
1,510,331 + +1.8
1,510,362 + -1.4
1,510,362 + -0.6
1,510,370 - +0.4

Or see this region's nucleotide sequence