Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1295

Experiment: Rifampicin 0.000625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000625 mg/ml
1,319,408	-		Synpcc7942_1294	0.43	-1.8
1,319,414	+		Synpcc7942_1294	0.43	+1.9
1,319,415	+		Synpcc7942_1294	0.43	-0.6
1,319,422	+		Synpcc7942_1294	0.44	+0.2
1,319,422	-		Synpcc7942_1294	0.44	+1.2
1,319,501	+		Synpcc7942_1294	0.49	-1.6
1,319,501	+		Synpcc7942_1294	0.49	-1.8
1,319,512	+		Synpcc7942_1294	0.50	+0.1
1,319,522	+		Synpcc7942_1294	0.50	-0.5
1,319,522	+		Synpcc7942_1294	0.50	-0.6
1,319,522	+		Synpcc7942_1294	0.50	-2.8
1,319,527	+		Synpcc7942_1294	0.51	-0.6
1,319,530	-		Synpcc7942_1294	0.51	-1.0
1,319,530	-		Synpcc7942_1294	0.51	+2.4
1,319,530	-		Synpcc7942_1294	0.51	-0.6
1,319,530	-		Synpcc7942_1294	0.51	+2.5
1,319,530	-				+1.9
1,319,530	-		Synpcc7942_1294	0.51	+1.2
1,319,603	-		Synpcc7942_1294	0.55	+0.6
1,319,608	-		Synpcc7942_1294	0.56	+1.3
1,319,628	+		Synpcc7942_1294	0.57	-0.1
1,319,632	-		Synpcc7942_1294	0.57	-0.2
1,319,636	-		Synpcc7942_1294	0.57	+0.8
1,319,651	+		Synpcc7942_1294	0.58	-1.5
1,319,658	+		Synpcc7942_1294	0.59	+2.4
1,319,658	+		Synpcc7942_1294	0.59	-0.8
1,319,663	+		Synpcc7942_1294	0.59	+0.7
1,319,663	+		Synpcc7942_1294	0.59	-1.2
1,319,663	+		Synpcc7942_1294	0.59	+1.0
1,319,671	-		Synpcc7942_1294	0.60	-0.4
1,319,692	+		Synpcc7942_1294	0.61	+2.4
1,319,692	+		Synpcc7942_1294	0.61	+0.9
1,319,692	+		Synpcc7942_1294	0.61	-0.2
1,319,692	+		Synpcc7942_1294	0.61	+3.0
1,319,702	+		Synpcc7942_1294	0.62	+1.4
1,319,706	+		Synpcc7942_1294	0.62	+1.5
1,319,711	+		Synpcc7942_1294	0.62	+1.7
1,319,714	-		Synpcc7942_1294	0.62	+2.0
1,319,716	+		Synpcc7942_1294	0.63	-1.2
1,319,717	+		Synpcc7942_1294	0.63	+0.3
1,319,718	+		Synpcc7942_1294	0.63	+1.6
1,319,719	-		Synpcc7942_1294	0.63	-1.2
1,319,724	+		Synpcc7942_1294	0.63	+1.8
1,319,732	-		Synpcc7942_1294	0.64	+0.6
1,319,732	-		Synpcc7942_1294	0.64	+1.9
1,319,744	+		Synpcc7942_1294	0.64	-1.1
1,319,790	-		Synpcc7942_1294	0.67	-0.2
1,319,795	+		Synpcc7942_1294	0.68	+0.0
1,319,826	+		Synpcc7942_1294	0.70	-0.4
1,319,847	+		Synpcc7942_1294	0.71	+0.8
1,319,847	+		Synpcc7942_1294	0.71	+1.0
1,319,849	+		Synpcc7942_1294	0.71	+0.4
1,319,849	-				+0.4
1,319,852	+		Synpcc7942_1294	0.71	+0.2
1,319,855	-		Synpcc7942_1294	0.71	+0.9
1,319,855	-		Synpcc7942_1294	0.71	+2.8
1,319,855	-		Synpcc7942_1294	0.71	+0.4
1,319,860	-		Synpcc7942_1294	0.72	+0.4
1,319,865	-		Synpcc7942_1294	0.72	-0.2
1,319,872	+		Synpcc7942_1294	0.73	+2.8
1,319,880	-		Synpcc7942_1294	0.73	-0.3
1,319,913	-		Synpcc7942_1294	0.75	+0.3
1,320,024	+		Synpcc7942_1294	0.82	-1.2
1,320,024	+		Synpcc7942_1294	0.82	-1.0
1,320,024	+		Synpcc7942_1294	0.82	-3.1
1,320,024	+		Synpcc7942_1294	0.82	-1.2
1,320,024	+		Synpcc7942_1294	0.82	-2.0
1,320,024	+		Synpcc7942_1294	0.82	-0.1
1,320,026	+		Synpcc7942_1294	0.82	-1.2
1,320,032	-		Synpcc7942_1294	0.83	+0.0
1,320,032	-		Synpcc7942_1294	0.83	+0.0
1,320,032	-		Synpcc7942_1294	0.83	+2.8
1,320,032	-		Synpcc7942_1294	0.83	+0.4
1,320,032	-		Synpcc7942_1294	0.83	-1.8
1,320,032	-		Synpcc7942_1294	0.83	-1.2
1,320,032	-		Synpcc7942_1294	0.83	+1.4
1,320,032	-		Synpcc7942_1294	0.83	+0.9
1,320,050	+		Synpcc7942_1294	0.84	+2.5
1,320,144	+		Synpcc7942_1294	0.90	-2.0
1,320,144	+		Synpcc7942_1294	0.90	-0.0
1,320,152	-				+0.1
1,320,152	-				-0.1
1,320,159	+				-2.2
1,320,169	+				-0.3
1,320,197	-				+1.4
1,320,199	+				+0.4
1,320,207	-				-0.3
1,320,214	+				-0.6
1,320,214	+				-2.0
1,320,221	+				+0.7
1,320,222	-				+0.0
1,320,222	-				+0.8
1,320,226	+				+0.4
1,320,229	-				+0.6
1,320,236	+				+0.8
1,320,310	+				-1.0
1,320,312	+				+0.3
1,320,312	+				+0.5
1,320,324	+				-0.5
1,320,326	+				-2.2
1,320,354	+				+1.2
1,320,357	+				-0.6
1,320,357	+				+0.4
1,320,362	-				+1.4
1,320,367	+				+0.7
1,320,371	+				-0.1
1,320,404	+				+1.2
1,320,409	+				-2.2
1,320,422	-				+1.7
1,320,468	-				-0.8
1,320,525	+		Synpcc7942_1295	0.11	-0.6
1,320,525	+		Synpcc7942_1295	0.11	+0.7
1,320,542	+		Synpcc7942_1295	0.12	-2.6
1,320,545	-		Synpcc7942_1295	0.13	+3.5
1,320,552	+		Synpcc7942_1295	0.13	+0.8
1,320,580	+		Synpcc7942_1295	0.15	-2.0
1,320,601	+		Synpcc7942_1295	0.17	+1.0
1,320,657	+		Synpcc7942_1295	0.21	-0.6
1,320,657	+		Synpcc7942_1295	0.21	-2.2
1,320,667	+		Synpcc7942_1295	0.21	+4.7
1,320,675	-		Synpcc7942_1295	0.22	-2.2
1,320,675	-		Synpcc7942_1295	0.22	-2.2
1,320,675	-		Synpcc7942_1295	0.22	+1.9
1,320,715	+		Synpcc7942_1295	0.25	-3.1
1,320,728	+		Synpcc7942_1295	0.26	-0.6
1,320,728	+		Synpcc7942_1295	0.26	-1.5
1,320,738	+		Synpcc7942_1295	0.26	+0.5
1,320,739	+		Synpcc7942_1295	0.27	+0.4
1,320,763	+		Synpcc7942_1295	0.28	-2.0
1,320,777	+		Synpcc7942_1295	0.29	+2.1
1,320,809	+		Synpcc7942_1295	0.32	-2.6
1,320,865	+		Synpcc7942_1295	0.36	+2.5
1,320,875	-		Synpcc7942_1295	0.36	+1.2
1,320,893	-		Synpcc7942_1295	0.38	+1.4
1,320,930	+		Synpcc7942_1295	0.40	-2.0
1,320,931	-		Synpcc7942_1295	0.40	-1.2
1,320,938	-		Synpcc7942_1295	0.41	+0.6
1,320,938	-		Synpcc7942_1295	0.41	+1.4
1,320,938	-		Synpcc7942_1295	0.41	-0.1
1,320,938	-		Synpcc7942_1295	0.41	+1.0
1,320,938	-		Synpcc7942_1295	0.41	-1.2
1,320,943	+		Synpcc7942_1295	0.41	+1.2
1,320,974	+		Synpcc7942_1295	0.43	-2.2
1,321,010	+		Synpcc7942_1295	0.46	+1.2
1,321,045	+		Synpcc7942_1295	0.49	-2.0
1,321,054	-		Synpcc7942_1295	0.49	-0.1
1,321,054	-		Synpcc7942_1295	0.49	+0.6
1,321,054	-		Synpcc7942_1295	0.49	+0.4
1,321,062	+		Synpcc7942_1295	0.50	+1.5
1,321,062	+		Synpcc7942_1295	0.50	+2.5
1,321,070	-		Synpcc7942_1295	0.50	+1.2
1,321,070	-		Synpcc7942_1295	0.50	-2.0
1,321,071	-		Synpcc7942_1295	0.50	+0.9
1,321,071	-		Synpcc7942_1295	0.50	+2.5
1,321,074	+		Synpcc7942_1295	0.51	+2.4
1,321,077	-		Synpcc7942_1295	0.51	+0.4
1,321,083	-		Synpcc7942_1295	0.51	+0.4
1,321,130	+		Synpcc7942_1295	0.55	-0.6
1,321,130	+		Synpcc7942_1295	0.55	+0.4
1,321,138	-		Synpcc7942_1295	0.55	+0.2
1,321,161	-		Synpcc7942_1295	0.57	-2.5
1,321,161	-		Synpcc7942_1295	0.57	+1.9
1,321,164	+		Synpcc7942_1295	0.57	-1.1
1,321,188	+		Synpcc7942_1295	0.59	-0.9
1,321,196	-		Synpcc7942_1295	0.59	-1.6
1,321,262	-		Synpcc7942_1295	0.64	-1.3
1,321,269	+		Synpcc7942_1295	0.65	+0.7
1,321,322	+		Synpcc7942_1295	0.69	+0.6
1,321,330	-		Synpcc7942_1295	0.69	+2.4
1,321,332	-		Synpcc7942_1295	0.69	+0.8
1,321,334	+		Synpcc7942_1295	0.69	-1.2
1,321,356	+		Synpcc7942_1295	0.71	+0.5
1,321,356	+		Synpcc7942_1295	0.71	+2.3
1,321,356	+		Synpcc7942_1295	0.71	-0.9
1,321,364	-				+3.1
1,321,390	+		Synpcc7942_1295	0.73	-2.8
1,321,399	-		Synpcc7942_1295	0.74	-0.6
1,321,399	-		Synpcc7942_1295	0.74	+0.2
1,321,411	+		Synpcc7942_1295	0.75	-1.6
1,321,414	-		Synpcc7942_1295	0.75	-0.8
1,321,414	-		Synpcc7942_1295	0.75	+0.4
1,321,454	-		Synpcc7942_1295	0.78	+3.9
1,321,456	+				-0.6
1,321,513	+		Synpcc7942_1295	0.82	-1.1
1,321,526	-		Synpcc7942_1295	0.83	+0.4
1,321,528	+		Synpcc7942_1295	0.83	+2.5
1,321,578	+		Synpcc7942_1295	0.87	+4.1
1,321,591	+		Synpcc7942_1295	0.88	-0.5
1,321,616	+		Synpcc7942_1295	0.90	+1.4
1,321,670	+				+1.4
1,321,670	+				+2.7
1,321,694	+				+0.2
1,321,696	-				-0.1
1,321,696	-				+1.5
1,321,696	-				-1.2
1,321,700	+				+1.0
1,321,702	-				-2.4
1,321,702	-				+0.7
1,321,703	-				-2.4
1,321,725	-				-0.7
1,321,735	-				-1.3
1,321,747	+				+0.7
1,321,755	-				+0.1
1,321,755	-				+0.8
1,321,755	-				+2.2
1,321,755	-				+1.9
1,321,755	-				-1.6
1,321,755	-				+1.8
1,321,762	-				+1.5
1,321,790	+				+2.2
1,321,799	+				-1.6
1,321,801	+				+1.6
1,321,821	-				+1.8
1,321,848	+				-1.6
1,321,856	-				+2.6
1,321,868	-				-1.6
1,321,942	+				-1.8
1,321,950	-				+2.0
1,322,013	-		Synpcc7942_1296	0.17	-0.4
1,322,060	+		Synpcc7942_1296	0.23	+0.8
1,322,060	+		Synpcc7942_1296	0.23	-3.0
1,322,060	+		Synpcc7942_1296	0.23	-0.6
1,322,118	-		Synpcc7942_1296	0.32	-3.5
1,322,143	-		Synpcc7942_1296	0.35	-0.6
1,322,149	+		Synpcc7942_1296	0.36	-1.6
1,322,211	+		Synpcc7942_1296	0.45	+0.8
1,322,211	+		Synpcc7942_1296	0.45	-1.2
1,322,219	+		Synpcc7942_1296	0.46	+0.5
1,322,219	-		Synpcc7942_1296	0.46	+0.7
1,322,231	+		Synpcc7942_1296	0.48	-0.6
1,322,237	+		Synpcc7942_1296	0.49	+3.2
1,322,252	+		Synpcc7942_1296	0.51	-0.7
1,322,267	-		Synpcc7942_1296	0.53	+2.2
1,322,276	-		Synpcc7942_1296	0.54	-2.6
1,322,337	+				-1.2
1,322,341	+		Synpcc7942_1296	0.64	-0.6
1,322,345	-		Synpcc7942_1296	0.64	+0.6
1,322,348	+		Synpcc7942_1296	0.65	+0.7
1,322,374	-		Synpcc7942_1296	0.68	-2.6
1,322,394	+		Synpcc7942_1296	0.71	+2.2
1,322,397	-		Synpcc7942_1296	0.72	-2.8
1,322,421	-		Synpcc7942_1296	0.75	-0.6
1,322,442	+		Synpcc7942_1296	0.78	+2.9
1,322,442	+		Synpcc7942_1296	0.78	+0.7
1,322,442	+		Synpcc7942_1296	0.78	-0.2
1,322,450	-		Synpcc7942_1296	0.79	+0.4
1,322,456	-		Synpcc7942_1296	0.80	-1.2
1,322,474	+		Synpcc7942_1296	0.83	-1.6
1,322,474	+		Synpcc7942_1296	0.83	-2.4
1,322,482	-		Synpcc7942_1296	0.84	-0.4
1,322,482	-		Synpcc7942_1296	0.84	-0.2
1,322,496	+		Synpcc7942_1296	0.86	+1.2
1,322,496	+		Synpcc7942_1296	0.86	-0.7
1,322,496	+		Synpcc7942_1296	0.86	+0.6
1,322,501	+		Synpcc7942_1296	0.87	+0.4
1,322,503	+		Synpcc7942_1296	0.87	-0.2
1,322,504	-		Synpcc7942_1296	0.87	-0.6
1,322,504	-		Synpcc7942_1296	0.87	+0.4
1,322,504	-		Synpcc7942_1296	0.87	+1.4
1,322,504	-		Synpcc7942_1296	0.87	+0.9
1,322,504	-		Synpcc7942_1296	0.87	+1.0
1,322,504	-		Synpcc7942_1296	0.87	+0.4
1,322,509	-		Synpcc7942_1296	0.88	-1.6
1,322,509	-		Synpcc7942_1296	0.88	-1.2
1,322,582	+				-0.3
1,322,585	-				+1.4
1,322,618	-				+0.2
1,322,642	+				-2.6
1,322,656	+				-0.5
1,322,656	+				+2.0
1,322,664	-				+0.4
1,322,666	+				-1.6
1,322,666	+				-0.6
1,322,674	-				+0.4
1,322,674	-				+0.8
1,322,703	+				-0.8