Experiment: Rifampicin 0.000625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0954 and Synpcc7942_0955 overlap by 29 nucleotides Synpcc7942_0955 and Synpcc7942_0956 are separated by 135 nucleotides Synpcc7942_0956 and cobO are separated by 3 nucleotides cobO and purN are separated by 6 nucleotides
Synpcc7942_0954: Synpcc7942_0954 - glycine cleavage T-protein-like, at 962,266 to 963,300
_0954
Synpcc7942_0955: Synpcc7942_0955 - hypothetical protein, at 963,272 to 963,790
_0955
Synpcc7942_0956: Synpcc7942_0956 - hypothetical protein, at 963,926 to 965,068
_0956
Synpcc7942_0957: cobO - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 965,072 to 965,719
cobO
Synpcc7942_0958: purN - phosphoribosylglycinamide formyltransferase, at 965,726 to 966,355
purN
Position (kb) 963
964
965
966 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 962.928 kb on + strand, within Synpcc7942_0954 at 962.928 kb on + strand, within Synpcc7942_0954 at 962.928 kb on - strand, within Synpcc7942_0954 at 962.928 kb on - strand, within Synpcc7942_0954 at 962.964 kb on + strand, within Synpcc7942_0954 at 962.969 kb on + strand, within Synpcc7942_0954 at 963.006 kb on - strand, within Synpcc7942_0954 at 963.028 kb on - strand, within Synpcc7942_0954 at 963.031 kb on + strand, within Synpcc7942_0954 at 963.041 kb on - strand, within Synpcc7942_0954 at 963.041 kb on - strand, within Synpcc7942_0954 at 963.049 kb on - strand, within Synpcc7942_0954 at 963.049 kb on - strand, within Synpcc7942_0954 at 963.094 kb on + strand, within Synpcc7942_0954 at 963.097 kb on - strand, within Synpcc7942_0954 at 963.112 kb on + strand, within Synpcc7942_0954 at 963.147 kb on - strand, within Synpcc7942_0954 at 963.154 kb on - strand, within Synpcc7942_0954 at 963.157 kb on - strand, within Synpcc7942_0954 at 963.159 kb on + strand, within Synpcc7942_0954 at 963.192 kb on + strand, within Synpcc7942_0954 at 963.200 kb on + strand at 963.208 kb on - strand at 963.220 kb on - strand at 963.249 kb on + strand at 963.249 kb on + strand at 963.250 kb on - strand at 963.257 kb on - strand at 963.262 kb on - strand at 963.314 kb on - strand at 963.331 kb on - strand, within Synpcc7942_0955 at 963.379 kb on + strand, within Synpcc7942_0955 at 963.397 kb on - strand, within Synpcc7942_0955 at 963.449 kb on - strand, within Synpcc7942_0955 at 963.449 kb on - strand at 963.449 kb on - strand, within Synpcc7942_0955 at 963.449 kb on - strand, within Synpcc7942_0955 at 963.454 kb on - strand, within Synpcc7942_0955 at 963.480 kb on - strand, within Synpcc7942_0955 at 963.494 kb on + strand, within Synpcc7942_0955 at 963.497 kb on + strand, within Synpcc7942_0955 at 963.499 kb on + strand, within Synpcc7942_0955 at 963.499 kb on + strand, within Synpcc7942_0955 at 963.499 kb on + strand, within Synpcc7942_0955 at 963.502 kb on - strand, within Synpcc7942_0955 at 963.506 kb on - strand, within Synpcc7942_0955 at 963.507 kb on - strand, within Synpcc7942_0955 at 963.507 kb on - strand, within Synpcc7942_0955 at 963.508 kb on + strand, within Synpcc7942_0955 at 963.513 kb on + strand, within Synpcc7942_0955 at 963.513 kb on + strand, within Synpcc7942_0955 at 963.513 kb on + strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.523 kb on + strand at 963.523 kb on + strand, within Synpcc7942_0955 at 963.554 kb on + strand, within Synpcc7942_0955 at 963.598 kb on + strand, within Synpcc7942_0955 at 963.599 kb on + strand, within Synpcc7942_0955 at 963.599 kb on + strand, within Synpcc7942_0955 at 963.606 kb on - strand, within Synpcc7942_0955 at 963.640 kb on + strand, within Synpcc7942_0955 at 963.647 kb on + strand, within Synpcc7942_0955 at 963.648 kb on - strand, within Synpcc7942_0955 at 963.674 kb on - strand, within Synpcc7942_0955 at 963.676 kb on + strand, within Synpcc7942_0955 at 963.769 kb on - strand at 963.801 kb on - strand at 963.801 kb on - strand at 963.823 kb on + strand at 963.824 kb on - strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.864 kb on + strand at 963.865 kb on + strand at 963.866 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.878 kb on + strand at 963.878 kb on + strand at 963.886 kb on - strand at 963.886 kb on - strand at 963.886 kb on - strand at 963.887 kb on - strand at 963.897 kb on - strand at 964.014 kb on + strand at 964.023 kb on - strand at 964.043 kb on - strand, within Synpcc7942_0956 at 964.043 kb on - strand, within Synpcc7942_0956 at 964.068 kb on - strand, within Synpcc7942_0956 at 964.068 kb on - strand, within Synpcc7942_0956 at 964.138 kb on - strand, within Synpcc7942_0956 at 964.150 kb on - strand, within Synpcc7942_0956 at 964.158 kb on - strand, within Synpcc7942_0956 at 964.172 kb on + strand, within Synpcc7942_0956 at 964.256 kb on + strand, within Synpcc7942_0956 at 964.280 kb on + strand, within Synpcc7942_0956 at 964.304 kb on - strand, within Synpcc7942_0956 at 964.310 kb on + strand, within Synpcc7942_0956 at 964.354 kb on + strand, within Synpcc7942_0956 at 964.357 kb on + strand, within Synpcc7942_0956 at 964.362 kb on - strand, within Synpcc7942_0956 at 964.402 kb on + strand, within Synpcc7942_0956 at 964.426 kb on + strand, within Synpcc7942_0956 at 964.439 kb on - strand, within Synpcc7942_0956 at 964.532 kb on - strand, within Synpcc7942_0956 at 964.595 kb on - strand, within Synpcc7942_0956 at 964.670 kb on + strand, within Synpcc7942_0956 at 964.758 kb on + strand, within Synpcc7942_0956 at 964.766 kb on - strand, within Synpcc7942_0956 at 964.931 kb on - strand, within Synpcc7942_0956 at 964.947 kb on + strand, within Synpcc7942_0956 at 965.021 kb on + strand at 965.040 kb on - strand at 965.042 kb on + strand at 965.042 kb on + strand at 965.045 kb on - strand at 965.055 kb on + strand at 965.062 kb on - strand at 965.751 kb on + strand at 965.778 kb on + strand at 965.780 kb on - strand at 965.822 kb on - strand, within purN at 965.882 kb on + strand, within purN at 965.901 kb on + strand, within purN at 965.912 kb on + strand, within purN at 965.913 kb on + strand, within purN at 965.955 kb on + strand at 965.964 kb on - strand, within purN at 965.969 kb on - strand, within purN at 965.981 kb on - strand, within purN at 966.008 kb on + strand, within purN at 966.024 kb on + strand, within purN
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000625 mg/ml remove 962,928 + Synpcc7942_0954 0.64 +1.3 962,928 + Synpcc7942_0954 0.64 +0.2 962,928 - Synpcc7942_0954 0.64 -0.4 962,928 - Synpcc7942_0954 0.64 -0.6 962,964 + Synpcc7942_0954 0.67 +1.2 962,969 + Synpcc7942_0954 0.68 -0.8 963,006 - Synpcc7942_0954 0.71 -2.1 963,028 - Synpcc7942_0954 0.74 +0.4 963,031 + Synpcc7942_0954 0.74 -1.5 963,041 - Synpcc7942_0954 0.75 -2.4 963,041 - Synpcc7942_0954 0.75 -0.4 963,049 - Synpcc7942_0954 0.76 +1.2 963,049 - Synpcc7942_0954 0.76 -0.8 963,094 + Synpcc7942_0954 0.80 +1.8 963,097 - Synpcc7942_0954 0.80 +2.2 963,112 + Synpcc7942_0954 0.82 +0.5 963,147 - Synpcc7942_0954 0.85 -2.1 963,154 - Synpcc7942_0954 0.86 +1.3 963,157 - Synpcc7942_0954 0.86 +1.2 963,159 + Synpcc7942_0954 0.86 +1.4 963,192 + Synpcc7942_0954 0.89 +1.6 963,200 + -0.5 963,208 - +1.1 963,220 - +2.2 963,249 + -1.8 963,249 + +0.8 963,250 - -1.8 963,257 - +2.3 963,262 - +0.6 963,314 - +2.4 963,331 - Synpcc7942_0955 0.11 +0.2 963,379 + Synpcc7942_0955 0.21 +1.8 963,397 - Synpcc7942_0955 0.24 -0.2 963,449 - Synpcc7942_0955 0.34 +0.2 963,449 - +0.2 963,449 - Synpcc7942_0955 0.34 -0.5 963,449 - Synpcc7942_0955 0.34 -0.6 963,454 - Synpcc7942_0955 0.35 -1.8 963,480 - Synpcc7942_0955 0.40 +0.1 963,494 + Synpcc7942_0955 0.43 +1.2 963,497 + Synpcc7942_0955 0.43 -0.3 963,499 + Synpcc7942_0955 0.44 -3.5 963,499 + Synpcc7942_0955 0.44 +0.1 963,499 + Synpcc7942_0955 0.44 +2.2 963,502 - Synpcc7942_0955 0.44 -1.8 963,506 - Synpcc7942_0955 0.45 +0.5 963,507 - Synpcc7942_0955 0.45 +0.2 963,507 - Synpcc7942_0955 0.45 -0.0 963,508 + Synpcc7942_0955 0.45 +3.1 963,513 + Synpcc7942_0955 0.46 +1.7 963,513 + Synpcc7942_0955 0.46 +2.5 963,513 + Synpcc7942_0955 0.46 -0.6 963,521 - Synpcc7942_0955 0.48 -0.8 963,521 - Synpcc7942_0955 0.48 +1.5 963,521 - Synpcc7942_0955 0.48 +0.2 963,521 - Synpcc7942_0955 0.48 +1.8 963,521 - Synpcc7942_0955 0.48 +2.1 963,521 - Synpcc7942_0955 0.48 -2.1 963,521 - Synpcc7942_0955 0.48 -0.1 963,521 - Synpcc7942_0955 0.48 +1.5 963,521 - Synpcc7942_0955 0.48 -1.4 963,523 + +3.0 963,523 + Synpcc7942_0955 0.48 +0.2 963,554 + Synpcc7942_0955 0.54 +1.0 963,598 + Synpcc7942_0955 0.63 -0.2 963,599 + Synpcc7942_0955 0.63 -0.4 963,599 + Synpcc7942_0955 0.63 -0.6 963,606 - Synpcc7942_0955 0.64 +1.4 963,640 + Synpcc7942_0955 0.71 +0.2 963,647 + Synpcc7942_0955 0.72 +0.4 963,648 - Synpcc7942_0955 0.72 +0.1 963,674 - Synpcc7942_0955 0.77 -0.2 963,676 + Synpcc7942_0955 0.78 +1.0 963,769 - -5.2 963,801 - -0.1 963,801 - -1.2 963,823 + +0.2 963,824 - -2.1 963,863 + +1.1 963,863 + -0.4 963,863 + -0.8 963,863 + +0.9 963,863 + -2.7 963,864 + -0.8 963,865 + +0.4 963,866 - +0.8 963,871 - -0.5 963,871 - -0.8 963,871 - -1.8 963,871 - -0.2 963,871 - -0.8 963,871 - +1.1 963,871 - +0.4 963,878 + +0.2 963,878 + -1.4 963,886 - -0.8 963,886 - -0.2 963,886 - -0.0 963,887 - +0.5 963,897 - +0.4 964,014 + +0.2 964,023 - -0.9 964,043 - Synpcc7942_0956 0.10 +0.6 964,043 - Synpcc7942_0956 0.10 -1.7 964,068 - Synpcc7942_0956 0.12 +1.5 964,068 - Synpcc7942_0956 0.12 -2.6 964,138 - Synpcc7942_0956 0.19 -0.1 964,150 - Synpcc7942_0956 0.20 +0.0 964,158 - Synpcc7942_0956 0.20 +0.2 964,172 + Synpcc7942_0956 0.22 -1.4 964,256 + Synpcc7942_0956 0.29 +1.0 964,280 + Synpcc7942_0956 0.31 -1.1 964,304 - Synpcc7942_0956 0.33 -0.8 964,310 + Synpcc7942_0956 0.34 -1.8 964,354 + Synpcc7942_0956 0.37 -0.3 964,357 + Synpcc7942_0956 0.38 -1.8 964,362 - Synpcc7942_0956 0.38 -1.4 964,402 + Synpcc7942_0956 0.42 +1.8 964,426 + Synpcc7942_0956 0.44 +0.6 964,439 - Synpcc7942_0956 0.45 +0.2 964,532 - Synpcc7942_0956 0.53 +0.2 964,595 - Synpcc7942_0956 0.59 +0.9 964,670 + Synpcc7942_0956 0.65 -0.4 964,758 + Synpcc7942_0956 0.73 -3.2 964,766 - Synpcc7942_0956 0.73 +1.2 964,931 - Synpcc7942_0956 0.88 +0.2 964,947 + Synpcc7942_0956 0.89 +1.1 965,021 + +1.5 965,040 - -3.1 965,042 + -0.5 965,042 + -1.4 965,045 - +2.2 965,055 + +1.9 965,062 - +1.0 965,751 + +0.6 965,778 + +2.2 965,780 - -0.1 965,822 - purN Synpcc7942_0958 0.15 -2.1 965,882 + purN Synpcc7942_0958 0.25 -1.1 965,901 + purN Synpcc7942_0958 0.28 +0.2 965,912 + purN Synpcc7942_0958 0.30 +1.8 965,913 + purN Synpcc7942_0958 0.30 +0.2 965,955 + +1.2 965,964 - purN Synpcc7942_0958 0.38 +0.5 965,969 - purN Synpcc7942_0958 0.39 +0.2 965,981 - purN Synpcc7942_0958 0.40 -0.4 966,008 + purN Synpcc7942_0958 0.45 -4.2 966,024 + purN Synpcc7942_0958 0.47 +1.8
Or see this region's nucleotide sequence