Experiment: Rifampicin 0.000625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0809 and Synpcc7942_0810 are separated by 37 nucleotides Synpcc7942_0810 and nha1 are separated by 99 nucleotides
Synpcc7942_0809: Synpcc7942_0809 - hypothetical protein, at 803,073 to 804,815
_0809
Synpcc7942_0810: Synpcc7942_0810 - hypothetical protein, at 804,853 to 805,086
_0810
Synpcc7942_0811: nha1 - Na+/H+ antiporter, at 805,186 to 806,769
nha1
Position (kb) 804
805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 803.858 kb on - strand, within Synpcc7942_0809 at 803.858 kb on - strand, within Synpcc7942_0809 at 803.863 kb on - strand, within Synpcc7942_0809 at 803.880 kb on - strand, within Synpcc7942_0809 at 804.001 kb on + strand, within Synpcc7942_0809 at 804.018 kb on + strand, within Synpcc7942_0809 at 804.053 kb on + strand, within Synpcc7942_0809 at 804.072 kb on + strand, within Synpcc7942_0809 at 804.126 kb on + strand, within Synpcc7942_0809 at 804.127 kb on + strand, within Synpcc7942_0809 at 804.127 kb on + strand, within Synpcc7942_0809 at 804.135 kb on - strand, within Synpcc7942_0809 at 804.135 kb on - strand, within Synpcc7942_0809 at 804.194 kb on + strand, within Synpcc7942_0809 at 804.202 kb on - strand, within Synpcc7942_0809 at 804.221 kb on + strand, within Synpcc7942_0809 at 804.238 kb on + strand, within Synpcc7942_0809 at 804.255 kb on + strand, within Synpcc7942_0809 at 804.256 kb on - strand, within Synpcc7942_0809 at 804.291 kb on + strand, within Synpcc7942_0809 at 804.291 kb on + strand, within Synpcc7942_0809 at 804.299 kb on - strand, within Synpcc7942_0809 at 804.299 kb on - strand, within Synpcc7942_0809 at 804.309 kb on - strand, within Synpcc7942_0809 at 804.313 kb on + strand, within Synpcc7942_0809 at 804.313 kb on + strand, within Synpcc7942_0809 at 804.313 kb on + strand, within Synpcc7942_0809 at 804.313 kb on + strand, within Synpcc7942_0809 at 804.321 kb on - strand, within Synpcc7942_0809 at 804.321 kb on - strand, within Synpcc7942_0809 at 804.326 kb on - strand, within Synpcc7942_0809 at 804.354 kb on - strand, within Synpcc7942_0809 at 804.354 kb on - strand, within Synpcc7942_0809 at 804.358 kb on + strand, within Synpcc7942_0809 at 804.381 kb on - strand, within Synpcc7942_0809 at 804.383 kb on + strand, within Synpcc7942_0809 at 804.391 kb on - strand, within Synpcc7942_0809 at 804.391 kb on - strand, within Synpcc7942_0809 at 804.412 kb on - strand, within Synpcc7942_0809 at 804.423 kb on - strand, within Synpcc7942_0809 at 804.446 kb on + strand, within Synpcc7942_0809 at 804.471 kb on - strand, within Synpcc7942_0809 at 804.491 kb on - strand, within Synpcc7942_0809 at 804.498 kb on + strand, within Synpcc7942_0809 at 804.506 kb on - strand, within Synpcc7942_0809 at 804.506 kb on - strand, within Synpcc7942_0809 at 804.507 kb on + strand, within Synpcc7942_0809 at 804.559 kb on - strand, within Synpcc7942_0809 at 804.570 kb on - strand, within Synpcc7942_0809 at 804.572 kb on - strand, within Synpcc7942_0809 at 804.574 kb on + strand, within Synpcc7942_0809 at 804.574 kb on + strand, within Synpcc7942_0809 at 804.582 kb on - strand, within Synpcc7942_0809 at 804.585 kb on + strand, within Synpcc7942_0809 at 804.595 kb on + strand, within Synpcc7942_0809 at 804.595 kb on - strand, within Synpcc7942_0809 at 804.614 kb on - strand, within Synpcc7942_0809 at 804.668 kb on - strand at 804.669 kb on - strand at 804.674 kb on - strand at 804.674 kb on - strand at 804.674 kb on - strand at 804.699 kb on - strand at 804.709 kb on - strand at 804.711 kb on + strand at 804.716 kb on + strand at 804.724 kb on - strand at 804.736 kb on - strand at 804.743 kb on + strand at 804.788 kb on + strand at 804.794 kb on - strand at 804.796 kb on - strand at 804.809 kb on + strand at 804.809 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.811 kb on + strand at 804.818 kb on - strand at 804.818 kb on - strand at 804.818 kb on - strand at 804.818 kb on - strand at 804.818 kb on - strand at 804.819 kb on - strand at 804.819 kb on - strand at 804.819 kb on - strand at 804.819 kb on - strand at 804.825 kb on + strand at 804.917 kb on + strand, within Synpcc7942_0810 at 804.918 kb on - strand, within Synpcc7942_0810 at 804.943 kb on + strand, within Synpcc7942_0810 at 804.987 kb on + strand, within Synpcc7942_0810 at 804.987 kb on + strand, within Synpcc7942_0810 at 804.987 kb on + strand, within Synpcc7942_0810 at 804.987 kb on + strand, within Synpcc7942_0810 at 804.990 kb on + strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 805.011 kb on + strand, within Synpcc7942_0810 at 805.012 kb on + strand, within Synpcc7942_0810 at 805.012 kb on + strand, within Synpcc7942_0810 at 805.031 kb on + strand, within Synpcc7942_0810 at 805.039 kb on - strand, within Synpcc7942_0810 at 805.077 kb on + strand at 805.171 kb on + strand at 805.177 kb on - strand at 805.183 kb on + strand at 805.183 kb on + strand at 805.190 kb on + strand at 805.190 kb on + strand at 805.191 kb on - strand at 805.191 kb on - strand at 805.191 kb on - strand at 805.191 kb on - strand at 805.198 kb on - strand at 805.214 kb on - strand at 805.216 kb on + strand at 805.257 kb on - strand at 805.262 kb on + strand at 805.319 kb on + strand at 805.340 kb on + strand at 805.598 kb on + strand, within nha1 at 805.618 kb on + strand, within nha1 at 805.639 kb on - strand, within nha1 at 805.639 kb on - strand, within nha1 at 805.664 kb on - strand, within nha1 at 805.666 kb on - strand, within nha1 at 805.699 kb on + strand, within nha1 at 805.754 kb on - strand, within nha1 at 805.794 kb on + strand, within nha1 at 805.820 kb on + strand, within nha1 at 805.828 kb on - strand, within nha1 at 805.847 kb on + strand, within nha1 at 805.848 kb on + strand, within nha1 at 805.853 kb on + strand, within nha1 at 805.853 kb on + strand, within nha1 at 805.875 kb on - strand, within nha1 at 805.891 kb on + strand, within nha1 at 805.898 kb on + strand, within nha1 at 805.901 kb on + strand, within nha1 at 805.936 kb on - strand, within nha1 at 806.006 kb on + strand, within nha1 at 806.015 kb on + strand, within nha1 at 806.025 kb on + strand, within nha1 at 806.078 kb on + strand, within nha1 at 806.086 kb on - strand, within nha1
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000625 mg/ml remove 803,858 - Synpcc7942_0809 0.45 -3.0 803,858 - Synpcc7942_0809 0.45 +0.2 803,863 - Synpcc7942_0809 0.45 -3.1 803,880 - Synpcc7942_0809 0.46 +0.2 804,001 + Synpcc7942_0809 0.53 -2.1 804,018 + Synpcc7942_0809 0.54 -2.6 804,053 + Synpcc7942_0809 0.56 -1.4 804,072 + Synpcc7942_0809 0.57 -3.3 804,126 + Synpcc7942_0809 0.60 -0.8 804,127 + Synpcc7942_0809 0.60 -2.7 804,127 + Synpcc7942_0809 0.60 -2.6 804,135 - Synpcc7942_0809 0.61 -1.4 804,135 - Synpcc7942_0809 0.61 -2.6 804,194 + Synpcc7942_0809 0.64 -0.8 804,202 - Synpcc7942_0809 0.65 -3.1 804,221 + Synpcc7942_0809 0.66 -2.9 804,238 + Synpcc7942_0809 0.67 -2.6 804,255 + Synpcc7942_0809 0.68 -2.1 804,256 - Synpcc7942_0809 0.68 -3.4 804,291 + Synpcc7942_0809 0.70 -2.1 804,291 + Synpcc7942_0809 0.70 -2.8 804,299 - Synpcc7942_0809 0.70 -0.6 804,299 - Synpcc7942_0809 0.70 -1.4 804,309 - Synpcc7942_0809 0.71 -3.0 804,313 + Synpcc7942_0809 0.71 -1.1 804,313 + Synpcc7942_0809 0.71 -1.2 804,313 + Synpcc7942_0809 0.71 -3.4 804,313 + Synpcc7942_0809 0.71 -2.5 804,321 - Synpcc7942_0809 0.72 -1.3 804,321 - Synpcc7942_0809 0.72 -1.7 804,326 - Synpcc7942_0809 0.72 -3.3 804,354 - Synpcc7942_0809 0.73 +1.3 804,354 - Synpcc7942_0809 0.73 -1.4 804,358 + Synpcc7942_0809 0.74 -0.8 804,381 - Synpcc7942_0809 0.75 -2.8 804,383 + Synpcc7942_0809 0.75 -3.4 804,391 - Synpcc7942_0809 0.76 -2.4 804,391 - Synpcc7942_0809 0.76 +0.2 804,412 - Synpcc7942_0809 0.77 -2.8 804,423 - Synpcc7942_0809 0.77 -2.8 804,446 + Synpcc7942_0809 0.79 -1.8 804,471 - Synpcc7942_0809 0.80 +0.2 804,491 - Synpcc7942_0809 0.81 -2.6 804,498 + Synpcc7942_0809 0.82 +0.2 804,506 - Synpcc7942_0809 0.82 -0.8 804,506 - Synpcc7942_0809 0.82 -1.4 804,507 + Synpcc7942_0809 0.82 -3.1 804,559 - Synpcc7942_0809 0.85 -0.8 804,570 - Synpcc7942_0809 0.86 -1.1 804,572 - Synpcc7942_0809 0.86 -1.4 804,574 + Synpcc7942_0809 0.86 +0.2 804,574 + Synpcc7942_0809 0.86 -2.4 804,582 - Synpcc7942_0809 0.87 -3.4 804,585 + Synpcc7942_0809 0.87 -1.4 804,595 + Synpcc7942_0809 0.87 -0.6 804,595 - Synpcc7942_0809 0.87 -2.8 804,614 - Synpcc7942_0809 0.88 +0.2 804,668 - +0.2 804,669 - -2.4 804,674 - +0.9 804,674 - -3.0 804,674 - +0.2 804,699 - +0.4 804,709 - -1.6 804,711 + -1.8 804,716 + +0.2 804,724 - -1.8 804,736 - +2.4 804,743 + +4.0 804,788 + +0.2 804,794 - +1.9 804,796 - +1.0 804,809 + -0.8 804,809 + -1.5 804,810 + +1.2 804,810 + +1.8 804,810 + +4.5 804,810 + -2.1 804,810 + -0.6 804,810 + +0.7 804,810 + +1.7 804,810 + +2.0 804,811 + +0.4 804,818 - +1.2 804,818 - +1.7 804,818 - +0.2 804,818 - -1.2 804,818 - +2.0 804,819 - +2.1 804,819 - +0.9 804,819 - +0.0 804,819 - -0.6 804,825 + -2.1 804,917 + Synpcc7942_0810 0.27 -1.4 804,918 - Synpcc7942_0810 0.28 +0.6 804,943 + Synpcc7942_0810 0.38 +0.4 804,987 + Synpcc7942_0810 0.57 +0.3 804,987 + Synpcc7942_0810 0.57 +2.4 804,987 + Synpcc7942_0810 0.57 +0.3 804,987 + Synpcc7942_0810 0.57 -2.4 804,990 + Synpcc7942_0810 0.59 -0.8 804,995 - Synpcc7942_0810 0.61 -0.8 804,995 - Synpcc7942_0810 0.61 +1.0 804,995 - Synpcc7942_0810 0.61 +0.3 804,995 - Synpcc7942_0810 0.61 -1.8 804,995 - Synpcc7942_0810 0.61 +0.9 804,995 - Synpcc7942_0810 0.61 -0.8 805,011 + Synpcc7942_0810 0.68 -1.1 805,012 + Synpcc7942_0810 0.68 +0.9 805,012 + Synpcc7942_0810 0.68 -0.5 805,031 + Synpcc7942_0810 0.76 -0.6 805,039 - Synpcc7942_0810 0.79 -3.1 805,077 + -0.8 805,171 + -2.5 805,177 - +1.2 805,183 + +1.2 805,183 + -0.8 805,190 + -0.6 805,190 + +1.1 805,191 - +0.2 805,191 - +0.2 805,191 - -0.5 805,191 - -1.1 805,198 - +0.4 805,214 - +1.4 805,216 + +1.8 805,257 - +1.9 805,262 + +2.0 805,319 + +1.5 805,340 + -0.3 805,598 + nha1 Synpcc7942_0811 0.26 -1.8 805,618 + nha1 Synpcc7942_0811 0.27 +0.1 805,639 - nha1 Synpcc7942_0811 0.29 +1.0 805,639 - nha1 Synpcc7942_0811 0.29 -2.1 805,664 - nha1 Synpcc7942_0811 0.30 -3.0 805,666 - nha1 Synpcc7942_0811 0.30 -0.8 805,699 + nha1 Synpcc7942_0811 0.32 +0.8 805,754 - nha1 Synpcc7942_0811 0.36 +0.9 805,794 + nha1 Synpcc7942_0811 0.38 +2.5 805,820 + nha1 Synpcc7942_0811 0.40 -0.8 805,828 - nha1 Synpcc7942_0811 0.41 -1.8 805,847 + nha1 Synpcc7942_0811 0.42 -0.2 805,848 + nha1 Synpcc7942_0811 0.42 +1.4 805,853 + nha1 Synpcc7942_0811 0.42 +3.8 805,853 + nha1 Synpcc7942_0811 0.42 +3.8 805,875 - nha1 Synpcc7942_0811 0.43 +0.8 805,891 + nha1 Synpcc7942_0811 0.45 +2.4 805,898 + nha1 Synpcc7942_0811 0.45 -2.1 805,901 + nha1 Synpcc7942_0811 0.45 -0.4 805,936 - nha1 Synpcc7942_0811 0.47 -3.3 806,006 + nha1 Synpcc7942_0811 0.52 +1.2 806,015 + nha1 Synpcc7942_0811 0.52 -2.4 806,025 + nha1 Synpcc7942_0811 0.53 -1.7 806,078 + nha1 Synpcc7942_0811 0.56 +1.1 806,086 - nha1 Synpcc7942_0811 0.57 +0.5
Or see this region's nucleotide sequence